Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03121 ATGGAGGCCAGATTTGGCGCAGAAGCTTTTCACTTTTATGGTATGGGTTCCTCAGATTTGCGTGCTGTAGGAAACAGGTCCTTGGAATGGGATTTAAACGAGTGGAAATGGGATGGTGATCTTTTTGTAGCTAGTCCTCTGAATCCCGTGCCTGCAAATAGAGTAGGTCAACAAATTTTCCCTCTTGATTCTGGGATCCCCACGGCCGGGGGTTCCTCCAACAGTTCATCGTCTTGCTCTGATGAGGTAAATCTTGGGATTGACAAGGGTAAGAAGgaaggagagaagaaaaggagagtAATTGTGATTGAAGATGACAGTTTGAATGAGGAACCAGGTAGCCTCAGCTTAAAGCTTGGTGGTAATGGTTCTCCACTTGCTGATAAGGAGATAGCAAGTTGGGAACGGGCAAATGGGAAGAAAACCAGATTAACGGGAGGCAGTTCAAATCGAGCGGTGTGTCAGGTGGAGGACTGCGGTGCAGATCTGAGCAACGCTAAAGATTATCACCGACGCCATAAAGTTTGTGAGATGCACTCCAAGGCTAGTAGGGCTCTCGTCGGGAATGTAATGCAGCGGTTCTGTCAACAATGTAGTCGGTTTCACATACTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCGGGCCATAATAAACGGAGGAGGAAAATAAATCATGATGTTGTTCCAAACGGAAGTTCAGCAAACGATGATCAAACTAGTAGCTATCTGTTGATTAGTTTATTGAAGATACTGTCAAATATGCACTCTAATAGGTCAGATCAGACCACAGATCAGGATCTGCTATCTCATCTTCTAAGGAGCCTTGCTAGTCAAAATGGTGAACAAGGAAGTAAAAACTTGTCTAATCTTTTGCGGGAACCTGGGAACTTGTTGAAAGAAGGAACATCATCTGGAAAGTCAGAGATGGTTTCTACTTTATTATCAAATGGTTCTCAAGGCCTTATAAGACAACATCAAACAGTATCTATGACTGAAATGCAACATCAAGGGATGCATGCACATCATGCCAGGGCTTCTGATCAACAAACCATGTCTTCTACAAAACCTAGCATTTCAAACAGTCCTCCAGCTTACTCAGAGGCTAGAGACAGTACTGCTGGACAGATCAAGatcaataattttgatttgaacgACATATATATTGACTCTGATGATGGCATGGAAGATATGGAAAGATTGCCTGTCTCTGCAAATCTTGGGACTGGCCATCTTGATTACCCTTGGGCTCAACAAGATTCTCTGCAGTCAAGTCCACCTCAAACAAGTGGAAACTCAGATTCTGCATCTGCTCAATCCCCTTCTAGTTCTAGTGGAGAAGCTCAGAGCCGGACAGATCGAATTGTTTTTAAACTCTTTGGTAAAGAACCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGACATGGAGAGCTACATACGACCAGGTTGTGTTGTTTTGACCATATATCTGCGTCAAGCTGAGGTTGTGTGGGAGGAAATTTGCTATGATCTGGCTTCCAGTTTGAATAGGCTTCTGGAGGTCTCAGATGATGCCTTCTGGAGAACTGGTTGGGTTAACATTAGGCTGCAGCATCAGATAGCCTTCATTTTCAATGGTCAGGTAGTCATAGACACACCCATACCTTTCAGAAGTAACAACTACAGTAAGATTATGAGTGTGAGTCCGATTGCCGTACCAGCATCTAAGAGAACTCAATTTTCAGTTAAGGGCATTAACCTGATTCGCCCTGCCTCCAGGTTGTTGTGCGCTCTAGAAGGGAAATATCTGGTCTGTGAAAATGTGCATGAGTCTAcagccaaaaagaaagaagatgctTATGAGTCAATGGATGGCCTTGATTGTTCGAGAGAGGTTGATGAGCTCCAGTGTGTCCAGTTTTCATGTGCTGTCCCTGTGCAAAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGCAGcagtttttttcctttcatagTTGCAGAGGAGGATGTTTGCTCAGAAATCTGTGCACTCGAGACTCTGCTAGAATCAAGTGAAACTGACTTAGATGTTGGAGGAActggaaaaatcaaaactaaaagTCAAGCCATGGATTTCATTCATGAAATGGGGTGGCTTCTCCACAGAAGCCAATTGAAATCTAGGCTGGTTCACGTAAATTCTAACGCAGATCTCTTTCCATTGAAACGGTTTAAGTGGTTAGTGGAGTTCTCTATGGACCATGATTGGTGTGCAGTAGTGAAGAAACTGTTGAACCTACTACTAGATGGAGCTGTGGATTCTGGAGATCAACCTTCGCTGTATCTTGCACTTTCAGAGATGGGCCTTCTTCATAGAGCTGTCAGGAGAAATAGCAGGCAGTTGGTTGAACTGCTTTTGAGATATGCCTCTGAGAATATTTCTGACAAGCTTGGACCCGACCAAAAGGCACTGGTTGATGGAGAGAATCGGAGCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGCAGGTTTGACGCCACTCCACATAGCAGCCGGAAAAGATGGTTCTGAGGAAGTACTGGATGCTTTAACTGATGACCCGTGCATGGTGGGAATTGAAGCATGGAAAAGCGCCCGTGATACCACCGGCTCCACTCCTGAAGATTATGCACGATTACGTGGCCATTATTCTTACATTCACCTGGTtcagaagaaaattaacagGAGACAAGCAGCAGGAGCTCATGTGGTGGTCGAGATTCCCAGTGAACAAGCAGATAGCAGTACAAGGCAGAAGCAAAACGAGTTGTCTGCTAGCTTTGAGATTGGAAAGGCTTCAGTAAGAAATGCCCAAGGGCACTGCAGACTTTGTGATAAAGAATTGTCTTGTAGAACCACAATGGGTAGGTCTTTAGTGTACAAACCTGCTATCCTCTCAATGGTGGGCATAGCAGCTGTGTGTGTCTGTGTAGCCCTTCTGTTTAAAAGCTCACCTGAAGTTCTGTACGTGTTCCAACCCTTCAGGTGGGAATCATTGGATTTCGGTACAAGCTG 3068 0.4289 MEARFGAEAFHFYGMGSSDLRAVGNRSLEWDLNEWKWDGDLFVASPLNPVPANRVGQQIFPLDSGIPTAGGSSNSSSSCSDEVNLGIDKGKKEGEKKRRVIVIEDDSLNEEPGSLSLKLGGNGSPLADKEIASWERANGKKTRLTGGSSNRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKINHDVVPNGSSANDDQTSSYLLISLLKILSNMHSNRSDQTTDQDLLSHLLRSLASQNGEQGSKNLSNLLREPGNLLKEGTSSGKSEMVSTLLSNGSQGLIRQHQTVSMTEMQHQGMHAHHARASDQQTMSSTKPSISNSPPAYSEARDSTAGQIKINNFDLNDIYIDSDDGMEDMERLPVSANLGTGHLDYPWAQQDSLQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCVVLTIYLRQAEVVWEEICYDLASSLNRLLEVSDDAFWRTGWVNIRLQHQIAFIFNGQVVIDTPIPFRSNNYSKIMSVSPIAVPASKRTQFSVKGINLIRPASRLLCALEGKYLVCENVHESTAKKKEDAYESMDGLDCSREVDELQCVQFSCAVPVQNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICALETLLESSETDLDVGGTGKIKTKSQAMDFIHEMGWLLHRSQLKSRLVHVNSNADLFPLKRFKWLVEFSMDHDWCAVVKKLLNLLLDGAVDSGDQPSLYLALSEMGLLHRAVRRNSRQLVELLLRYASENISDKLGPDQKALVDGENRSFLFRPDVVGPAGLTPLHIAAGKDGSEEVLDALTDDPCMVGIEAWKSARDTTGSTPEDYARLRGHYSYIHLVQKKINRRQAAGAHVVVEIPSEQADSSTRQKQNELSASFEIGKASVRNAQGHCRLCDKELSCRTTMGRSLVYKPAILSMVGIAAVCVCVALLFKSSPEVLYVFQPFRWESLDFGTS 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03121 1022 MobiDBLite consensus disorder prediction 67 83 - -
Bva13g03121 1022 MobiDBLite consensus disorder prediction 421 454 - -
Bva13g03121 1022 Gene3D - 145 215 IPR036893 GO:0003677|GO:0005634
Bva13g03121 1022 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1021 IPR044817 GO:0003677
Bva13g03121 1022 SUPERFAMILY SBT domain 152 233 IPR036893 GO:0003677|GO:0005634
Bva13g03121 1022 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1021 - -
Bva13g03121 1022 MobiDBLite consensus disorder prediction 339 377 - -
Bva13g03121 1022 SUPERFAMILY Ankyrin repeat 770 907 IPR036770 -
Bva13g03121 1022 MobiDBLite consensus disorder prediction 65 90 - -
Bva13g03121 1022 MobiDBLite consensus disorder prediction 348 377 - -
Bva13g03121 1022 Pfam SBP domain 154 227 IPR004333 GO:0003677
Bva13g03121 1022 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677
Bva13g03121 1022 Gene3D - 738 913 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03121 Bva-Chr13 21946771 21953920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03121 1 1022 SBP-box Gene Family AT3G60030 55.010 0.0 981
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva13g03121 SBP 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03121 - - gmx:100814273 1604.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03121 13 21946771 21953920 Bva13g03121 13 21946771 21953920 ECH