Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03115 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATCGTCGGATACGATTGACAATGTGAAGGCGAAGATCCAAGACAAAGAAGGCATCCCACCAGACCAACAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACCCTTGCTGACTACAATATCCAGAAGGAGTCTACGCTCCACCTTGTTCTTCGGCTTCGCGGTGGTGCTAAGAAGCGTAAGAAGAAGACTTACACAAAGCCCAAGAAGATTAagcacaagaagaagaaggtgaagCTTGCTGTTCTACAGTTCTACAAGGTCGATGATTCTGGCAAGGTCCAGAGGTTGAGGAAGGAGTGCCCCAATGCCGAATGTGGAGCTGGCACTTTTATGGCCAATCACTTTGACAGACACTACTGTGGTAAGTGTGGGCTCACCTATGTTTATCAGAAAGCCGGCGGTGACTG 470 0.4723 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03115 156 Gene3D - 81 154 IPR038582 -
Bva13g03115 156 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Bva13g03115 156 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Bva13g03115 156 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Bva13g03115 156 PRINTS Ubiquitin signature 11 31 IPR019956 -
Bva13g03115 156 PRINTS Ubiquitin signature 32 52 IPR019956 -
Bva13g03115 156 PRINTS Ubiquitin signature 53 74 IPR019956 -
Bva13g03115 156 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 146 - -
Bva13g03115 156 PANTHER UBIQUITIN 1 146 - -
Bva13g03115 156 SMART ubq_7 1 72 IPR000626 GO:0005515
Bva13g03115 156 Gene3D - 1 80 - -
Bva13g03115 156 CDD Ubl_ubiquitin 1 76 - -
Bva13g03115 156 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Bva13g03115 156 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Bva13g03115 156 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Bva13g03115 156 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03115 Bva-Chr13 21919235 21920099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03115 1 154 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 96.104 2.88e-91 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03115 K02977 - egr:104456611 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03115 13 21919235 21920099 Bva13g03115 13 21919235 21920099 ECH