Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03092 ATGGTTCCCAAAACCCATTTCCAAGTTATTCTTTtgctccttttttctttccacattACCCACATTAGTTCCAAATGTTCATCTCGGAGCTCAGTTATAGACATGGATTATGACAACTGGATTTCTTGGAATGTTAAGAATTACGAGAAGAAGACTATTTTGGAGACGAAACGGAACGTTGCAGCATTGGGAGGTGAGGGAAAAACTGCAGATTTGAGGCTGCAGAAGGCCGAGAACAATAAAATGACAGTAACTGTGAAGCAAGATGGTAGTGGTGATTTCAAGACCGTCAGAGAAGCTATTAATAGCATTTCACCACACAATAGTAGAAGAGTCAGAGTGTTCATTGGACCTGGCGTTTATAgGGAAAAAGTGGTCATCCCTAGAAATTTGCCCTTTATTACATTGCTAGGGGATGCTAATAATGCGCCAACCATTACTGGGAATGATACGGCTTCCGTGAGTGGGAGGACCTTCCAGAGTGCAACTGTTGCCGTGGATGCTAACTATTTTATAGCCATCAACATAAAATTTGAGAACACAGCTCCACACGAGATTGGATCGTTGAGGGGACAAGGTGTGGCGCTTCGCATCTCGGGGACTAAAGCCGCATTTTACAATTGTAGCTTTGTTGGGACTCAAGACACCCTGTACGATCACAAGGGTCTTCACTACTTCAATAATTGCTACATTCAAGGCTCCGTCGATTTCATATTCGGCTCCGGCAGATCCTTCTACGagAACTGCTATTTGAATTCGACAGCGAAGAAAGTGGCGTCGATCACAGCACAGAAGCGTACGAATTCGTCGTTGGAAAGTGGGTTTTCGTTCAAAAACAGCGTGGTGACGGGAAGTGGGCAAGCTTATCTCGGAAGAGCGTGGGGTGATTATTCAACAGTGGTATTCTCCTACACGTACATGGACAAGATTGTGATCCCCCAAGGATGGAGTGATTGGGGCGACCAAAAGCGCGATGTGAGAGTGTATTATGGAGAATACAAGTGCAGTGGACCGGGGGCTAACTTGACCGGGAGAGTGGCATGGGCAAGGATGCTTACGGACCAAGAGGCCATGCCTTTTATTGGGACACACTATATTGAAGGGGACACTTGGCTCAGCACATCTTTACCCCAATA 1136 0.4481 MVPKTHFQVILLLLFSFHITHISSKCSSRSSVIDMDYDNWISWNVKNYEKKTILETKRNVAALGGEGKTADLRLQKAENNKMTVTVKQDGSGDFKTVREAINSISPHNSRRVRVFIGPGVYREKVVIPRNLPFITLLGDANNAPTITGNDTASVSGRTFQSATVAVDANYFIAINIKFENTAPHEIGSLRGQGVALRISGTKAAFYNCSFVGTQDTLYDHKGLHYFNNCYIQGSVDFIFGSGRSFYENCYLNSTAKKVASITAQKRTNSSLESGFSFKNSVVTGSGQAYLGRAWGDYSTVVFSYTYMDKIVIPQGWSDWGDQKRDVRVYYGEYKCSGPGANLTGRVAWARMLTDQEAMPFIGTHYIEGDTWLSTSLPQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03092 378 Gene3D - 77 377 IPR012334 -
Bva13g03092 378 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Bva13g03092 378 SUPERFAMILY Pectin lyase-like 81 374 IPR011050 -
Bva13g03092 378 Pfam Pectinesterase 84 369 IPR000070 GO:0030599|GO:0042545
Bva13g03092 378 PANTHER PECTINESTERASE 25 372 - -
Bva13g03092 378 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 25 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03092 Bva-Chr13 21826965 21829078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03092 69 373 Carbohydrate Esterase AT5G47500 43.438 9.35e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03092 K01051 - qsu:112011696 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03092 13 21826965 21829078 Bva13g03092 13 21826965 21829078 ECH