Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03082 ATGAATGGCGACTCAAACAACTCGTTTGTTAATGGAGGACACCATTTTACTAACGGTGACAGTGGATATGGTCCTAACCATTCTATGGCCCATACTGGGCGGAAACGAGGCTGGCATCATAACTCTAGTCACGGAACTTCTCCAGATCAATTGGATGGTGGATATCACTGGAAACTTTATGTTTCACCCGTTCCAAGAACATCCACAGAAGCTGAAatcCGCTCTGTGTTTGGAGGACATGGAACTATTGTTGAGGTTGTTCTTTTGAGGGATAAGAGAACTGGCTTCCGACAAGGAAGCTGTTTTGTGAAATTTGCAACATTAGAGGCAGCTGAAAGTGCCATAAGAGCTCTAAGTAATCAGTATACATTTCCTGGCGAATCTTTTCCCGTTGTTGTCAAATATGCTGAACGAGACCTTGGACGTCGTgATGTGCTTGACAAAGTGTTTGTAGGTCACCTCAGTAAAGATGCTTCAAAAAACGAAATTGAAGACATATTTTCCCCATATGGTCATGTTGAAGATATCTTCATTGCTTATGATGAGCAGAGGCAAAGCCGTGGCTATggttttgtcaaattttcaaatagagAAATGGCATGGGCAGCTATCAAAGGGCTAAATGGAACATTCACCATGAGAGGTTCTAATTGTCCACTAATTGTTCGTTTTGCGGATCCTAAGAAACCTAAGTCGGGAGAACCAAGGGGCAACAGTTTACAGGGGAATACGAATCTTGGTCCCTATGCTCAAGAACCAACAGTTAGGCCCTTGCCAAATTTTGGTAATTGCATTGGAGGGAGTGTTCCACCTATGGCTCCACATTATTATACAATTCCTCACCCACAGGTTGCTTCTTATGTGCAAAACTGGGAACCTCCTGCCCCCGTGATGCAACAACCATTTCCTCCCCAACCAGCACATCCACAATTGGCTTCAATGTCGTTGCAGCCAATTCCAGCTCCCAACTTATCTTCTCAACCAGTTGTTGCTGAAATGCAGAGACAATCACATCCAACAGATTCATCGACTCAACATATAGAGCAGCAGCTAAATTCACAGGTTGGTCATCAGACCAGAAGTGACCCAACATTTTCTAGCAGCACGTCACCTGATATGCCTGTAAGTCCCCAAGAAGAAGATCCTCCAGATTGTGACTGGAGTGAACATACCTGCCCTGATGGTTATAAGTACTACTACAACTGTGTCACTTGTGATAGCAGATGGGATAAGCCTGAGGAGTATGCTTTGTACGAGCAAGAATTACAAAAGCAGCAAGAGCAGGAAGATCTCCGTTG 1298 0.4337 MNGDSNNSFVNGGHHFTNGDSGYGPNHSMAHTGRKRGWHHNSSHGTSPDQLDGGYHWKLYVSPVPRTSTEAEIRSVFGGHGTIVEVVLLRDKRTGFRQGSCFVKFATLEAAESAIRALSNQYTFPGESFPVVVKYAERDLGRRDVLDKVFVGHLSKDASKNEIEDIFSPYGHVEDIFIAYDEQRQSRGYGFVKFSNREMAWAAIKGLNGTFTMRGSNCPLIVRFADPKKPKSGEPRGNSLQGNTNLGPYAQEPTVRPLPNFGNCIGGSVPPMAPHYYTIPHPQVASYVQNWEPPAPVMQQPFPPQPAHPQLASMSLQPIPAPNLSSQPVVAEMQRQSHPTDSSTQHIEQQLNSQVGHQTRSDPTFSSSTSPDMPVSPQEEDPPDCDWSEHTCPDGYKYYYNCVTCDSRWDKPEEYALYEQELQKQQEQEDLR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03082 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 138 IPR000504 GO:0003723
Bva13g03082 432 MobiDBLite consensus disorder prediction 1 25 - -
Bva13g03082 432 SUPERFAMILY RNA-binding domain, RBD 40 141 IPR035979 GO:0003676
Bva13g03082 432 ProSitePatterns WW/rsp5/WWP domain signature. 387 412 IPR001202 GO:0005515
Bva13g03082 432 SUPERFAMILY RNA-binding domain, RBD 148 242 IPR035979 GO:0003676
Bva13g03082 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 212 IPR000504 GO:0003723
Bva13g03082 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 126 IPR000504 GO:0003723
Bva13g03082 432 PANTHER RNA BINDING PROTEIN 289 428 - -
Bva13g03082 432 MobiDBLite consensus disorder prediction 297 386 - -
Bva13g03082 432 MobiDBLite consensus disorder prediction 310 375 - -
Bva13g03082 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 227 IPR000504 GO:0003723
Bva13g03082 432 CDD WW 385 414 IPR001202 GO:0005515
Bva13g03082 432 MobiDBLite consensus disorder prediction 1 50 - -
Bva13g03082 432 PANTHER RNA BINDING PROTEIN 13 252 - -
Bva13g03082 432 SMART ww_5 382 414 IPR001202 GO:0005515
Bva13g03082 432 ProSiteProfiles WW/rsp5/WWP domain profile. 381 414 IPR001202 GO:0005515
Bva13g03082 432 MobiDBLite consensus disorder prediction 236 250 - -
Bva13g03082 432 MobiDBLite consensus disorder prediction 226 251 - -
Bva13g03082 432 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 13 252 - -
Bva13g03082 432 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 289 428 - -
Bva13g03082 432 SUPERFAMILY WW domain 386 419 IPR036020 GO:0005515
Bva13g03082 432 Gene3D - 366 431 - -
Bva13g03082 432 SMART rrm1_1 58 134 IPR000504 GO:0003723
Bva13g03082 432 SMART rrm1_1 148 223 IPR000504 GO:0003723
Bva13g03082 432 Gene3D - 144 233 IPR012677 -
Bva13g03082 432 Pfam WW domain 386 412 IPR001202 GO:0005515
Bva13g03082 432 Gene3D - 55 143 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03082 Bva-Chr13 21771734 21778051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03082 59 257 Eukaryotic Initiation Factors Gene Family AT4G34110 28.372 2.58e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03082 K13207 - gmx:100776162 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03082 13 21771734 21778051 Bva13g03082 13 21771734 21778051 ECH