Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03080 ATGGGTGTTTCTTCAGAACCTTTCcctctttccctttctttgaAAGATCTTATTCGGGGAACTGAAGAGAACAAAAATTCGTATGGGTCTTTGTGGAGCAAAGTGTTGGCAGCCCAAGCCAAGAAGCAGAAGGTCATCTCCAAGAGCAGCGCCGCCAAAGTCAGGAGGCCGTCGAGAGTTTTAACGAAGAGGAGAGCCGTACGTTTGATCGAAGGTCCTAGAAGGAGAAGCAATGGAATCGAGAGAAGGGTAAGAACACTGAGAAGGCTTTTACCCAACAGCGAGTCCATGGAATTGGATGGGCTGTTTAGGGAGACAGCTGATTATATTTTATCGTTACAAATGAGGGTGAGAGTGATGCAGATTATGGTTAAGGTACTGACAGGTTCTGATGACGTATG 401 0.4414 MGVSSEPFPLSLSLKDLIRGTEENKNSYGSLWSKVLAAQAKKQKVISKSSAAKVRRPSRVLTKRRAVRLIEGPRRRSNGIERRVRTLRRLLPNSESMELDGLFRETADYILSLQMRVRVMQIMVKVLTGSDDV 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03080 133 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 127 IPR036638 GO:0046983
Bva13g03080 133 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 14 129 IPR044660 GO:0006355
Bva13g03080 133 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Bva13g03080 133 PANTHER TRANSCRIPTION FACTOR UPBEAT1 14 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03080 Bva-Chr13 21760952 21761594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03080 55 133 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 50.602 2.07e-20 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03080 - - gmx:100794627 148.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03080 13 21760952 21761594 Bva13g03080 13 21760952 21761594 ECH