Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03073 ATGTCGAAGAGGAAGTTCGGATTCGAAGGGTTTGGCATAAACCGCCAAGCAACCTATAATTTTGAGCGATCTCAAGCCCCTCAACGGCTATATGTCCCTCCTTCCTCACGTCGCGGGCATGACAACTACGAGGATACCGACCTTGACAACATCGAGTACGACGACAATGATACTGATAAGGACGGGGGCAATAATAATGGCAGCAACAACAATGGTGACAACGAAGAAGAGATTGACCCTCTTGATGCTTTCATGGAAGGGATTCATGAAGAAGTGAAGGCTGCACCGCCTCCAAAGCCGAAGGAGAAGGCAGAGGACAGGTATAAGgatgatgatgaggatgatCCGATGGAGAGCTTTTTGAGAGCGAAGAAGGACTTAGGATTGACCCTGGCGTCCGAGGCTCTTCATGCTGGATATGATTCTGACGAGGAGGTTTATGCTGCTGCAAAGGCTGTGGACGCTGGTATGGTTGAGTATGATTCTGATGATAATCCCATCGTTCTCGATAGGAAGAAAATTGAACCGATACCAGCTCTGGATCACAGTTCTATTGACTACGAGCCATTTAATAAGGATTTTTACGAGGAGAAACCGTCAATATCAGGTATGAGTGATCAAGATGTTGCTGATTATAGGAAGAGTTTAGCCATTCGTGTATCAGGTTTTGATGTTCCTAAGCCCGTTAAGACATTTGAGGACTGTGGTTTTTCTCCACAACTTAtgaattctattaaaaaacaagGTTATGAGAAGCCGACATCCATACAGTGCCAAGCTTTACCCGTTGTGAGTTCTGGTAGAGACATTATTGGTATAGCAAAAACGGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTACATATCATGGATCAGCCTGAACTTGAGAAGGAAGAGGGTCCTATAGGAGTAATCTGTGCACCTACTAGAGAATTGGCACATCAGATATACTTGGAGTCCAAGAAATTTGCAAAAGCTTATGGGATACGTGTCTCTGCTGTGTACGGTGGAATGTCAAAACTAGATCAGTTTAAAGAACTCAAGGCAGGTTGTGAGATAGTCGTTGCTACACCTGGTAGATTGATAGACATGCTGAAAATGAAGGCTCTTTCAATGACAAGAGCAACATACCTGGTGCTTGATGAGGCTGATCGAATGTTTGACCTTGGATTTGAGCCACAAGTACAGTCCATTGTTGGTCAAATTAGACCCGACCGCCaaactttacttttttctgCAACAATGCCACGTAAAGTTGAAAAGTTGGCGAGGGAAATCCTTACTGATCCTGTAAGAGTAACAGTCGGGGAAGTTGGAATGGCCAATGAGGATATTACTCAAGTTGTTCATGTAATTCCTTCTGATGCAGAGAAATTGCCATGGCTTTTGGAGAAGCTGCCTGGAATGATTGATGAAGGTGATGTACTGGTATTTGCTTCCAAAAAGGCTGCTGTGGATGAAATTGAATCACAGTTGGTTCAGAGAGGCTTTAAAGTTGCAGCTCTTCATGGCGATAAAGATCAAGCATCTAGGATggaaattttgcaaaaatttaaatctggTGTTTACCACGTGCTGGTTGCAACTGATGTTGCTGCTCGTGGTCTGGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTTCATCGCATTGGTAGAACAGGTCGTGCTGGTGACAAAGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGTTTAATTGCAGCTGGGCAGAATGTGTCTATGGAGTTAATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAAGAAAGGGAGGTGGGAAGAAAGGTAGAGGGAGAGGAGGTGGTGCTGGGGGTCGAGGTGTTCGGGGAGTGGATTATGGTTTGGGTATTGGATATAATCCAGAGTCCAACAGCACTTCATCTAACACGGCTCCAAGTCGATCTGCCGCTGTAAATTCACTGCGAACAGGAATGATGGCACAATTTAGGAGTAGCTTTGTTGCTGcttcaaattctcaaaatcaagGCTTCAGTAACAGTACAAGCATTCCTGCTAATAAGAGACCAGCACTCCCTGGCTTTGTATCCGGTGGTTCAATAGGTGGGGATATAAATACCACTCAGTCTACAGCTGCATACAGTTCTGCTACATCAGCAGTAAATGCCACAACTCAGAACTCCGGAGTTAATGCTAGTCAGAAGAACTCGGAGAGTTCTAGACCTAGAGAAAGGCGGAGGCCATCAGGTTGGGATAGATA 2321 0.4287 MSKRKFGFEGFGINRQATYNFERSQAPQRLYVPPSSRRGHDNYEDTDLDNIEYDDNDTDKDGGNNNGSNNNGDNEEEIDPLDAFMEGIHEEVKAAPPPKPKEKAEDRYKDDDEDDPMESFLRAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMVEYDSDDNPIVLDRKKIEPIPALDHSSIDYEPFNKDFYEEKPSISGMSDQDVADYRKSLAIRVSGFDVPKPVKTFEDCGFSPQLMNSIKKQGYEKPTSIQCQALPVVSSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVICAPTRELAHQIYLESKKFAKAYGIRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKALSMTRATYLVLDEADRMFDLGFEPQVQSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDEGDVLVFASKKAAVDEIESQLVQRGFKVAALHGDKDQASRMEILQKFKSGVYHVLVATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGAGGRGVRGVDYGLGIGYNPESNSTSSNTAPSRSAAVNSLRTGMMAQFRSSFVAASNSQNQGFSNSTSIPANKRPALPGFVSGGSIGGDINTTQSTAAYSSATSAVNATTQNSGVNASQKNSESSRPRERRRPSGWDR 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03073 773 MobiDBLite consensus disorder prediction 758 773 - -
Bva13g03073 773 MobiDBLite consensus disorder prediction 91 116 - -
Bva13g03073 773 MobiDBLite consensus disorder prediction 615 641 - -
Bva13g03073 773 Gene3D - 438 614 IPR027417 -
Bva13g03073 773 CDD SF2_C_DEAD 448 580 - -
Bva13g03073 773 Pfam Helicase conserved C-terminal domain 474 570 IPR001650 -
Bva13g03073 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 608 IPR027417 -
Bva13g03073 773 MobiDBLite consensus disorder prediction 19 77 - -
Bva13g03073 773 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 382 390 IPR000629 -
Bva13g03073 773 Gene3D - 192 437 IPR027417 -
Bva13g03073 773 SMART ultradead3 249 451 IPR014001 -
Bva13g03073 773 MobiDBLite consensus disorder prediction 732 773 - -
Bva13g03073 773 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 658 - -
Bva13g03073 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 439 IPR027417 -
Bva13g03073 773 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 230 258 IPR014014 GO:0003724
Bva13g03073 773 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 658 - -
Bva13g03073 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 261 436 IPR014001 -
Bva13g03073 773 CDD DEADc_DDX42 241 437 - -
Bva13g03073 773 Pfam DEAD/DEAH box helicase 254 425 IPR011545 GO:0003676|GO:0005524
Bva13g03073 773 MobiDBLite consensus disorder prediction 732 757 - -
Bva13g03073 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 461 610 IPR001650 -
Bva13g03073 773 SMART helicmild6 489 570 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03073 Bva-Chr13 21725814 21729844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03073 230 586 Eukaryotic Initiation Factors Gene Family AT3G13920 34.722 2.47e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03073 K12835 - gmx:100814854 1231.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03073 13 21725814 21729844 Bva13g03073 13 21725814 21729844 ECH