Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03050 ATGGGAGAGGTAGTTGTGTTGATCGATGATTTGAAATCAATATCTGGGTTTTCTCGCTGTAGAATATGTCACGAAGAAGAATTCGAGAGTTCAAGAGGTTTGGAAGctccttgtgcttgctctggCACCGTTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCGACGAGAAAGGAAATACAACTTGTGAAATATGTCTTCAgCAATATGAACCTGGATATACGGCTCCTCCAAAGAAACCTCAGAATCAGATAATTGATGCAGCAATGACCATTAGGGATAGCCTACAAATTCCAAGAAGGGAGCAGGAGGCATTAAACGCAAGAGCAAGATTAGAGGGTGTCGTCGAAGGAATACCCAGATCAAGATCAGATGAGATTGAGGATGCTGAATGCACATCTGGCGCGGACAGAAGCGCGTCTTGCTGTCGATCACTGGCTTTGGCCTTTACACTTGTTTTGCTGGTAAGACATCTTTTCTTGGTGCTCACGAGCGAAGCGGAGGACCACCCGTTTCCACTTGTTACAGTATTTATACTTAGGGCTAGTGGAATTATTGTGCCCATGTACATAATTATTAGGACCATCGGAGCAATTCAAAACAGTGCTCGCAGCCGGTATCAGGATtctgatgatgaaaatgagcCACCACCTCATATCATTTCTATTTCTAGTCACTCTTA 686 0.4125 MGEVVVLIDDLKSISGFSRCRICHEEEFESSRGLEAPCACSGTVKFAHRDCIQRWCDEKGNTTCEICLQQYEPGYTAPPKKPQNQIIDAAMTIRDSLQIPRREQEALNARARLEGVVEGIPRSRSDEIEDAECTSGADRSASCCRSLALAFTLVLLVRHLFLVLTSEAEDHPFPLVTVFILRASGIIVPMYIIIRTIGAIQNSARSRYQDSDDENEPPPHIISISSHS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03050 228 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 218 IPR033275 -
Bva13g03050 228 SUPERFAMILY RING/U-box 18 72 - -
Bva13g03050 228 Pfam Protein of unknown function (DUF3675) 73 197 IPR022143 -
Bva13g03050 228 SMART ringv_2 19 68 IPR011016 GO:0008270
Bva13g03050 228 MobiDBLite consensus disorder prediction 208 228 - -
Bva13g03050 228 CDD RING_CH-C4HC3_MARCH 20 67 - -
Bva13g03050 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 77 IPR013083 -
Bva13g03050 228 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Bva13g03050 228 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 218 - -
Bva13g03050 228 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03050 Bva-Chr13 21638792 21640941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03050 20 67 C3H Transcription Factor Family AT2G37950 44.898 3.46e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03050 - - gmx:100797029 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03086 04 25510244 25513017 Bva13g03050 13 21638792 21640941 BWGD
Bva13g03050 13 21638792 21640941 Bva13g03050 13 21638792 21640941 ECH