Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03043 ATGGAAACCGGTTATCAATCTCAGGTGTTTCTCGGCGTTCATTTCGTACTATTTGGTTTTGATCCTATCATCGAGAACAAGGTCCGATTCAAGCTTTTAAGTGGTGGTGGTGTTGATGTAAGTCAATACGGCCGAAGTTGCACTCATGTCATTGTGGATAAGATTGTATATGATGATCCTGTTTGTGTTGCTGCACGAAATGATGGCAAGACTCTTGTAACTGCCTTGTGGGTTGATCATAGTGCTGATATTGGAATGCCCGTTGACCCTACCTTGATTATGTACAGACCCCTTAAAGATTTAAATGGAATACCGGGTGCCGAAAGTGCGATTATGTGCCTCACAGGTTATCAACGTCAGGATCGGGATGACATTATGACAATGGTTCGCCTGATGGGCGCAGTGTTTTCTAAGCCATTGGTGGCAAACAAGGTTACTCATCTTATATGCTACAAATTTGAAGGAGAAAAGTATGACCTTGCCAGGAAATTGAGGACAATAAAGCTAGTTAATCATCGTTGGCTAGAAGATTGcTTGAAGCATTGGGTGCTGCTTCCTGAAGATAAATATAACAAGAGTGGTTATGAACTAGAGATGGTGGAGGCAGAGGCTAAAGATTCTGAAGAAGGTGAAGATTCCATGCAGGGGCAATCTGGGAAAAGAAGTATAAACAAAAGCCCCCTTGGGTCGAAAATTGGTCCTGCAACAACTCACGAATTAGCAAAATCTGTCAGAGTGGCATCGAATGCATTCCCAGATTCTACTGCTCCTGAGCGGTTGCAGGAAGCGAATCAAGTTAGATCGACTCCCAGAAATGAGAACGGAGCTGATCAAGTCTCAAGCTTTGATAATGTTAATGATCTAAATAAACGTTGTCAGGATCCTGGGGTTTCTAGGCATGATACATCATGTCAGCTACCTGATTCAAATGTTAATGCTTCCGAGCCTAGGAATACCAACGTGCGAATGCCATTTAGCTTCCAGGATCTTAGTATTCCTGAAAATGGAAATTCTTCTGGTCAGCCATCTGATGTGCATGTTGGCACTTCTGAATCTAGGATGTTGGTAAATGACTTGATGTTAACTTCAACTTCTGAAAGTGCTGAAGGATTGGCAAATTCAGATGCCAAGGTCAATCATACAAGTTACTGCAGGAAAAGCGCAAGGAGATTTTCACTTCCAAGGACCCCAGATGAAAGCTCAGGCAATGTAACTTGCCCTTCTGTGTCACCTTCATATGAATTGAAATTTGGTAACGATCTTGAAACTTCTTCCAGCAAGATAGAAAACTCAAGGGATAGAATTATCTCTCCTTGCGTTGAAGGTTCTggtaaagaaaatgattttattcatGGGGGAGAATCCATTAGTTTATTGCCTCAGAAGAGGATGACTGAAACAACTTCtaccaaattaaaatcaaggaAGATAAGTCCTGATGTAAAATCATCCGGTGGAAGAGTTTCATCAATAAATGGAGTAACTCAAGGGTCGAAGTTGATATCTTTCACCAATGAACCACCTGAGACTGAAGGCAATATTTCCGCTGATAAAGATGGTGCTATCAAGCCGAACACTTTCTCCAAAAGTGTGAGCTCAGAGTCTGCAAAGTGTGATAATACCCATCACAATTCAGCTCAAGTGTCTCTTAAAACGGGTTTGAGTGATTCCAAGATTAATGGCATGCCTGATAAGGCAGGTTTTGGCATGGTAGAATCGGTTCATGATGGTAATGAAATACAGCCAcagaatgagaagaaagatcTCCAGTGTTCATCACCAAGTAACAAGAAATTTGGAAACGATGAATCCAGTGGTCTTACTTGTATGGATTTATGCAATAAAGTAAGCACTACCTTGGGTAAAAAATCACCCCGGAAAAAGTCGCTTGCCAAAAAAAGTTTGGGTTCTAGACCTAAACAGAAGGGCTCTGTTTGCttgaataaaacaataacTCAAGGTGATGGTGTAAGATTTTCCAGTGGATGCCAAGAGACAGCAACTTGTGATGCTGAGAAGCTTCCGATGTCCTCTCGAATTGTCGCTGTTGAAACATCATCAGAGCGAGAAAATGTTAGTAAATTAGCAGAAAAGGCTGGTGGCAGAATTGACTTTATGGATGATGAAACAGAGGCTCCAGAGGATAAATACGAATATGTAGTTGGGATGGCACATGACACAAACAAGTCTGAATTTGTTCAGCATTCGAAGGAAGTGGTTACAACGACAGAAGAGAAGTCAGCAGCAATTTACCATACAACGAAATGTGAACAAAGGCCTGGAAAGGCAGGCAAAGATGGAACTAAGCAACAAAAAGTAGTTTGTAACACCAATGTTGAGTTGGTGGAGTCAACTTCAAAggtaaatgaaaagaatatagGGAAAAAGCGCCCCGCAGGAAGAAGCAAGACAAAGACCGCCGCTCCCATGGATGTATCAAAATCTGAGATGGCTGTAGATGGGTTCAAGATTAATAATGATAGTAAAGATAAGGCAGAGATGGAATCCCtggaaaaaatattagttccCGCTTGTAGAAGTGATACTTCAACTGCCCTGACAAATGAGCCAGACGGTTTTCTTGAAGTAGATAAGGAGAACAGACCAATCGATCGAGAGCAGGATAAAGGGGTGGATAAATGTGTTGGAAACTCAACAACTAAATCGAGCGTATGGCCAGCAAAGATCAACCTAAGGACCAGAAAAGCAGGTCTTAATTCACCTATACAACAAGATAACAAAAGAGTAAAAACTGAACCTGTATGTTTTATATTGAGTGGACATCGCCCACAGAGAAAGGAGTTTCAGCAAATTATTAAGCGTTTAAATGGAAGAGTTTGCCGGGATTCTCATCAGTGGTCATATCAGGCAACACATTTCATAGCCCCTGATCCTATACGCAGGACGGAAAAATTTTTTGCCGCTGCTGCGTCAGGAAGGTGGATCCTTAAAATGGATTACTTAACCGCAAGTCATCAAGAAGGAAAATTCTTGGCAGAGGAGCCTTATGAGTGGCACCAGAATGGCCTCAGTGAGGATGGTGCTATCAATATGGAGGCTCCAAGAAAGTGGCGATTGTTGAGAGAGAGAACGGGTCATGGTGCCTTCTATGAAATGCGCATTATTATATATGGGGATTGCATTGCCCCACCTTTGGATACATTGAAGCGTGTAGTTAAAGCCGGCGATGGAACAATCTTGGCTACGTCTCCTCCCTACACTCGCTTCCTTGATACTGGAATTGATTATGCTATAGTTAGCCCTGGCATGCCACGTGTTGATCTGTGGGTCCAGGAGTTCTTGAAACATGAGATTCCCTGCGTTGTAGCAGACTACTTGGTCGAGTATGTATGCAAGCCTGGGTTCTCCCTTGAGAAACATGTACTATACGGGACTCATGCTTGGGCAGAAAGGTCATATTCTAAACTTCAAAGTAAGTCGGAAGAGATTATCGAGGAGCTCTTCCCTCCTCAAAATCCTGATGATAGTGATACAATTTGTCAAGTCTGTGGATCACGAGGTAGAGGGGAGGTAATGCTGATTTGTGGTGATGAAAGTGGTTCCGTTGGTTGTGGTATTGGCACCCACATTGATTGCTGTGATCCTCCGCTCAAAGATGTTCCTGAGGAAGACTGGTTTTGTCCAAAATGCAGTAAAAGCTCGAAAGATTCAAACGCATCCaagaagaccaaaaagagAATCTTGTCTTCATCGAAGAGTAAGTG 3725 0.4126 METGYQSQVFLGVHFVLFGFDPIIENKVRFKLLSGGGVDVSQYGRSCTHVIVDKIVYDDPVCVAARNDGKTLVTALWVDHSADIGMPVDPTLIMYRPLKDLNGIPGAESAIMCLTGYQRQDRDDIMTMVRLMGAVFSKPLVANKVTHLICYKFEGEKYDLARKLRTIKLVNHRWLEDCLKHWVLLPEDKYNKSGYELEMVEAEAKDSEEGEDSMQGQSGKRSINKSPLGSKIGPATTHELAKSVRVASNAFPDSTAPERLQEANQVRSTPRNENGADQVSSFDNVNDLNKRCQDPGVSRHDTSCQLPDSNVNASEPRNTNVRMPFSFQDLSIPENGNSSGQPSDVHVGTSESRMLVNDLMLTSTSESAEGLANSDAKVNHTSYCRKSARRFSLPRTPDESSGNVTCPSVSPSYELKFGNDLETSSSKIENSRDRIISPCVEGSGKENDFIHGGESISLLPQKRMTETTSTKLKSRKISPDVKSSGGRVSSINGVTQGSKLISFTNEPPETEGNISADKDGAIKPNTFSKSVSSESAKCDNTHHNSAQVSLKTGLSDSKINGMPDKAGFGMVESVHDGNEIQPQNEKKDLQCSSPSNKKFGNDESSGLTCMDLCNKVSTTLGKKSPRKKSLAKKSLGSRPKQKGSVCLNKTITQGDGVRFSSGCQETATCDAEKLPMSSRIVAVETSSERENVSKLAEKAGGRIDFMDDETEAPEDKYEYVVGMAHDTNKSEFVQHSKEVVTTTEEKSAAIYHTTKCEQRPGKAGKDGTKQQKVVCNTNVELVESTSKVNEKNIGKKRPAGRSKTKTAAPMDVSKSEMAVDGFKINNDSKDKAEMESLEKILVPACRSDTSTALTNEPDGFLEVDKENRPIDREQDKGVDKCVGNSTTKSSVWPAKINLRTRKAGLNSPIQQDNKRVKTEPVCFILSGHRPQRKEFQQIIKRLNGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKMDYLTASHQEGKFLAEEPYEWHQNGLSEDGAINMEAPRKWRLLRERTGHGAFYEMRIIIYGDCIAPPLDTLKRVVKAGDGTILATSPPYTRFLDTGIDYAIVSPGMPRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLEKHVLYGTHAWAERSYSKLQSKSEEIIEELFPPQNPDDSDTICQVCGSRGRGEVMLICGDESGSVGCGIGTHIDCCDPPLKDVPEEDWFCPKCSKSSKDSNASKKTKKRILSSSKSK 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03043 1241 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 2 1217 IPR044254 -
Bva13g03043 1241 SMART PHD_3 1166 1218 IPR001965 -
Bva13g03043 1241 Pfam BRCA1 C Terminus (BRCT) domain 925 991 IPR001357 -
Bva13g03043 1241 Gene3D BRCT domain 2 94 IPR036420 -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 249 319 - -
Bva13g03043 1241 Gene3D BRCT domain 98 225 IPR036420 -
Bva13g03043 1241 SUPERFAMILY BRCT domain 7 91 IPR036420 -
Bva13g03043 1241 SUPERFAMILY BRCT domain 63 191 IPR036420 -
Bva13g03043 1241 Pfam twin BRCT domain 111 174 IPR001357 -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 464 492 - -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 525 549 - -
Bva13g03043 1241 CDD BRCT_TopBP1_rpt7 922 995 - -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 1217 1241 - -
Bva13g03043 1241 Gene3D BRCT domain 914 1031 IPR036420 -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 788 811 - -
Bva13g03043 1241 ProSiteProfiles BRCT domain profile. 923 1005 IPR001357 -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 580 602 - -
Bva13g03043 1241 SUPERFAMILY FYVE/PHD zinc finger 1159 1221 IPR011011 -
Bva13g03043 1241 ProSiteProfiles Zinc finger PHD-type profile. 1164 1220 IPR019787 -
Bva13g03043 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1130 1233 IPR013083 -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 216 231 - -
Bva13g03043 1241 SMART BRCT_7 914 995 IPR001357 -
Bva13g03043 1241 SMART BRCT_7 7 85 IPR001357 -
Bva13g03043 1241 SMART BRCT_7 1033 1120 IPR001357 -
Bva13g03043 1241 SMART BRCT_7 98 182 IPR001357 -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 298 319 - -
Bva13g03043 1241 CDD BRCT_PAXIP1_rpt3 12 90 - -
Bva13g03043 1241 Gene3D BRCT domain 1032 1129 IPR036420 -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 584 602 - -
Bva13g03043 1241 SUPERFAMILY BRCT domain 921 1008 IPR036420 -
Bva13g03043 1241 ProSiteProfiles BRCT domain profile. 108 192 IPR001357 -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 505 549 - -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 249 288 - -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 202 234 - -
Bva13g03043 1241 Pfam PHD-finger 1166 1219 IPR019787 -
Bva13g03043 1241 MobiDBLite consensus disorder prediction 623 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03043 Bva-Chr13 21597760 21603508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03043 128 242 Core DNA Replication Machinery Family AT4G02110 61.207 8.70e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva13g03043 BRCT 4e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03043 K10728 - qsu:112006859 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03043 13 21597760 21603508 Bva13g03043 13 21597760 21603508 ECH