Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03029 ATGGAAGAAGAGAGGAAATTCAAATGCCAATATTGCAAGAGAGTGTTTATGAACTCGCAGGCGCTAGGAGGTCATCAAAATGCACACAAGAGAGAGCGCCAAATCAGAGCAAGGCGCTTCCAATTCAAGAGAACAATActtccatcatcatcatcattagcAGCATGTCTTCTTAGATCGCATCACTCACAAGCTCTCAGATTGCCACAGCCATCACCAACATCCtcctttatatatttgttcacAAACGGCACTCCCGTTGCTGCGTTTCAACCATTGCCATTACCCTTACCCTCAACCCCGATATTTAGTATTCCATCAACATCTTGTGCAGGAGCTTCTGCTGCAAACTTTCCTTATCGCTTTTATGCCTCGCCAACCCAACTGCAGTCTGCTGATCATAGTCTTGCTAAATTGCCCGACAATGATCCATCTGTCAACAACGTTGATGTCCGTCTAAAACTGTCCATCTA 473 0.4144 MEEERKFKCQYCKRVFMNSQALGGHQNAHKRERQIRARRFQFKRTILPSSSSLAACLLRSHHSQALRLPQPSPTSSFIYLFTNGTPVAAFQPLPLPLPSTPIFSIPSTSCAGASAANFPYRFYASPTQLQSADHSLAKLPDNDPSVNNVDVRLKLSI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03029 157 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Bva13g03029 157 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Bva13g03029 157 PANTHER ZINC FINGER PROTEIN 5 3 156 IPR044299 GO:0010090
Bva13g03029 157 PANTHER ZINC FINGER PROTEIN 6-LIKE 3 156 - -
Bva13g03029 157 SUPERFAMILY beta-beta-alpha zinc fingers 3 34 IPR036236 -
Bva13g03029 157 Gene3D Classic Zinc Finger 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03029 Bva-Chr13 21536797 21537270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03029 4 55 C2H2 Transcription Factor Family AT1G68360 59.615 4.16e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva13g03029 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03029 - - aprc:113861015 96.2857