Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03008 ATGGTTTCGCTGAAACTCCAGAAGCGTCTCGCAGCTAGCGTGCTCAAGTGTGGAAGGGGCAAGGTCTGGCTTGACCCCAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGCTAGTTAAGGATGGCTTCGTCATCAGGAAGCCAACCAAGATTCATTCACGATCTCGAGCTCGTCGTATGAAGGAGGCCAAGAGGAAGGGACGCCACTCTGGATATGGTAAGCGTAAGGGTACTAGGGAGGCAAGGCTTCCCACCAAGATCCTTTGGATGAGGAGGATGCGAGTGCTTAGGCGCTTGCTCCGCAAGTACAGAGAATCTAAGAAGATAGACAAGCACATGTACCATGACATGTATATGAAGGTGAAGGGTAACGTTTTTAAGAACAAGAGAGTTCTGATGGAGAGCATACATAAGTCCAAGGCTGAGAAGGCTAGAGAAAAGACTTTATCTGACCAGTTTGAGGCAAAGCGTGCAAAGAACAAGGCAAGCAGGGAAAGGAAAATTGCACGGAGGGAAGAACGCTTGGCCCAGGGTCCTGGAGAAAAGCCATCACCAGCACAAACAGCTACCCCACCTGCTACAGCCCAACCAGCCCAGACATCAAAGAAATCGAAGAAGTG 638 0.4922 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKPSPAQTATPPATAQPAQTSKKSKK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03008 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 212 IPR039547 GO:0003723|GO:0003735|GO:0022625
Bva13g03008 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Bva13g03008 212 MobiDBLite consensus disorder prediction 189 212 - -
Bva13g03008 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Bva13g03008 212 MobiDBLite consensus disorder prediction 57 79 - -
Bva13g03008 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Bva13g03008 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Bva13g03008 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Bva13g03008 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Bva13g03008 212 PANTHER RIBOSOMAL PROTEIN L19 1 212 - -
Bva13g03008 212 MobiDBLite consensus disorder prediction 149 184 - -
Bva13g03008 212 Gene3D - 57 188 - -
Bva13g03008 212 MobiDBLite consensus disorder prediction 57 85 - -
Bva13g03008 212 MobiDBLite consensus disorder prediction 149 212 - -
Bva13g03008 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03008 Bva-Chr13 21439051 21441127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03008 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.977 4.14e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03008 K02885 - gmx:100816734 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03008 13 21439051 21441127 Bva13g03008 13 21439051 21441127 ECH