Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03007 ATGTGTGGTGGTGCTATCATCGCTGACTTCATTCCTCAACAGAGGGGTCGCCGCCTCTCAGCTTCCGATCTCTGGCCTAATTCATTCGGTAAGCAGAATGATTTCGACTTGGATTATCTTCAATTCGATCAGGAGCACTCGGTTCCCCTCAAAAGTTCCCTACCCTCCTCAGTTGATGAACGAGTTGAGAAGCCCGTGAAGAGGCAGAGGAAGAATCTTTACAGAGGCATTCGACAGCGTCCGTGGGGTAAATGGGCTGCTGAGATTCGTGATCCCAGGAAAGGGGTTCGAGTTTGGCTTGGTACCTTCAACACCGCCGAAGAAGCTGCCAGGGCCTATGACAGAGAGGCTCGCAAAATCCGTGGCAAGAAGGCCAAAGTAAATTTTCCCAACGAAGACGACGAGTACTCCGTTCAAGCTCGTCTTAATCCACCACCTCCACGCTCAAATCCCACTCTCTATCAGCAACAGTACGGTTTTAATTTGAATGTTGTCCCCAAAAGTCTGAATTTGGATTTTGGTTATGATCTGAACCAAGTTGGAGCAATTCCTTCCAATGGGTTTGAGCCTGTTGGTGCTATCAACACTGACCCAATTGTTATTTCTGGCGATGAAAATTCTGGTAGTGGTTCAGGGTCAGAGGGTGCTTACTCAACGACGGAATTCATAGGCTCCAAccagaaaataaacaattatgttCCTCAGCCGAAGATGAACGGGAATGAGTCAACGaaggaagaaaagatgaaCAAGGAAGCGACCGAAGCTCGAGAGGAAGACCAAGTGCAGAAGCTGTCTGAGGAGTTTATGGCGTACGAGAACTACATGAAGTTTTATCAGATTCCGTACTATGATGGTCAATCGACAGCACCCAATGACATTCAGGAAAGCGTCGTTGATGGTCTATGGAGCTTCGACGATGAGGTCGTTCCTGCTTCTGTTAGCTCATCAGCATTCTG 959 0.4661 MCGGAIIADFIPQQRGRRLSASDLWPNSFGKQNDFDLDYLQFDQEHSVPLKSSLPSSVDERVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSVQARLNPPPPRSNPTLYQQQYGFNLNVVPKSLNLDFGYDLNQVGAIPSNGFEPVGAINTDPIVISGDENSGSGSGSEGAYSTTEFIGSNQKINNYVPQPKMNGNESTKEEKMNKEATEAREEDQVQKLSEEFMAYENYMKFYQIPYYDGQSTAPNDIQESVVDGLWSFDDEVVPASVSSSAF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03007 319 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Bva13g03007 319 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Bva13g03007 319 CDD AP2 74 131 IPR001471 GO:0003700|GO:0006355
Bva13g03007 319 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Bva13g03007 319 Coils Coil 241 268 - -
Bva13g03007 319 PANTHER EREBP TRANSCRIPTION FACTOR 1 308 - -
Bva13g03007 319 PANTHER DNA-BINDING DOMAIN 1 308 IPR044808 GO:0003700|GO:0009873
Bva13g03007 319 MobiDBLite consensus disorder prediction 230 261 - -
Bva13g03007 319 MobiDBLite consensus disorder prediction 241 261 - -
Bva13g03007 319 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Bva13g03007 319 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Bva13g03007 319 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Bva13g03007 319 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03007 Bva-Chr13 21435905 21437235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03007 1 131 AP2-EREBP Transcription Factor Family AT3G16770 52.941 2.91e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva13g03007 AP2 9.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03007 K09286 - gmx:100780763 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03007 13 21435905 21437235 Bva13g03007 13 21435905 21437235 ECH