LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva13g02994	ATGGATGCAGAACCGCATCCAAACTACGCTCACAACGGCGACCATGCTCGTCTCCGCCTTCATCGTCTTCTCTCCATGGTACTCATGGTCATTTTCTTTCACAGTTATCGTCACTTCTGTTTACGTCGTCACCATCACCATCTCATAATTCCTACCTTCACCTCCACAACCATCGCTGCAGATTCCAATGAGCCACTTGGACCTTCATTTTTGAAGTTGCTTCCCACCTTCACTTATTCCTCCACGAGCCATCATCGTCGGCTGCAGGAGTGTGCTGTCTGCTTATCAGAGTTTGAAGACGGCGACACAGGCCGTGTCCTCCCAAACTGTAACCACGCCTTCCACTGTCATTGCATAGACAAATGGTTCCGCTCTCGCTCGAACTGCCCGCTTTGTCGAACCCCGGTCCGACCGCTAAAAATTGAACCGGTTGGGTCGGTTTCGTCCTTTGATGTTGAAcctactcttttctttctctttgtgtCGTTGGTTCACAGTCAGAAAGTCACGCAGGTTGCTCGACTCTTCCACCACCCATTGGGTGCCCAAGAAAGCCATTA	560	0.4875	MDAEPHPNYAHNGDHARLRLHRLLSMVLMVIFFHSYRHFCLRRHHHHLIIPTFTSTTIAADSNEPLGPSFLKLLPTFTYSSTSHHRRLQECAVCLSEFEDGDTGRVLPNCNHAFHCHCIDKWFRSRSNCPLCRTPVRPLKIEPVGSVSSFDVEPTLFFLFVSLVHSQKVTQVARLFHHPLGAQESH	186

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva13g02994	186	Pfam	Ring finger domain	90	133	IPR001841	-
	Bva13g02994	186	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	69	140	IPR013083	-
	Bva13g02994	186	SMART	ring_2	91	132	IPR001841	-
	Bva13g02994	186	ProSiteProfiles	Zinc finger RING-type profile.	91	133	IPR001841	-
	Bva13g02994	186	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	6	139	-	-
	Bva13g02994	186	PANTHER	RING-H2 FINGER PROTEIN ATL64	6	139	-	-
	Bva13g02994	186	SUPERFAMILY	RING/U-box	76	139	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva13g02994	Bva-Chr13	21371651	21372211	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva13g02994	51	139	Rapid Response to Elicitors	AT3G16720	52.809	3.20e-25	97.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva13g02994	-		-	gmx:102665377	141.354

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva13g02994	13	21371651	21372211	Bva13g02994	13	21371651	21372211	ECH