Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02973 ATGAGTAGACGTGCAAGCAGAACTGTTTACGTTGGGAATCTACCAGGCGATATTCGCGAAAGAGAGGTGGAAGATTTGTTTATCAAGTATGGACACATAACTCATATTGACCTGAAGGTTCCTCCAAGGCCTCCTGGTTATGCATTTGTAGAGTTTGAAGATTCTCAAGACGCTGAGGATGCAATTCGCGGTCGTGATGGCTATGATTTTGATGGGCACAGATTACGGGTAGAGCCTGCACATGGTGGACGTGGTCAATCATCATCAAGAGATCGACATAGTAGTCACAGCAACGGTCGGGGACGTGGTGTATCTAGGCGCTCTGAATACCGTGTTCTAGTCACTGGGTTGCCGTCTTCTGCTTCCTGGCAGGATCTTAAAGATCACATGCGGAAAGCAGGGGATGTTTGCTTCTCCCAAGTTTTCCATGATGGAAGAGGTACAACTGGGATTGTAGATTACACAAACTACGAAGACATGAAATATGCGATCAAGAAGCTTGATGATTCTGAGTTTCGGAATGCATTTTCCAGGGCTTGCGTTCGTGTGAGGGAGTATGATTCCAGGCGTGACTCCTCTAGAAGTCCTAGTCGTGGCCGGTCTTATTCTAGGGGCAAAAGCTATAGTCGCAGTCGTAGCCGCAGTAACAGTCGGGGCCGGAGCCAAAGCAAGTCCCCTAAGGGTAAATCTACACAGCGTTCACCTGCTAGATCCCCTTCAAAATCTGTTTCTCGCTCACGTTCACACTCTAGGTCAAGGTCCCGTTCTTTATCAGGATCAAGATCAAGATCCAGATCTCCATTGCCTTCGCGTCATAAAAGCCCAAAAAGACGCAGTGCCAGCAGGAGCCCGAGTAGGAGCAGAAGCAAGAGTCCAAGTAGGAGCAGAAGCAGGAGCAAGAGTTTGTCTCgGTG 914 0.4847 MSRRASRTVYVGNLPGDIREREVEDLFIKYGHITHIDLKVPPRPPGYAFVEFEDSQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGQSSSRDRHSSHSNGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYEDMKYAIKKLDDSEFRNAFSRACVRVREYDSRRDSSRSPSRGRSYSRGKSYSRSRSRSNSRGRSQSKSPKGKSTQRSPARSPSKSVSRSRSHSRSRSRSLSGSRSRSRSPLPSRHKSPKRRSASRSPSRSRSKSPSRSRSRSKSLSR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02973 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Bva13g02973 304 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 288 - -
Bva13g02973 304 MobiDBLite consensus disorder prediction 73 107 - -
Bva13g02973 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Bva13g02973 304 MobiDBLite consensus disorder prediction 214 243 - -
Bva13g02973 304 SUPERFAMILY RNA-binding domain, RBD 6 176 IPR035979 GO:0003676
Bva13g02973 304 Gene3D - 2 109 IPR012677 -
Bva13g02973 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Bva13g02973 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 174 IPR000504 GO:0003723
Bva13g02973 304 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 288 - -
Bva13g02973 304 MobiDBLite consensus disorder prediction 266 304 - -
Bva13g02973 304 Gene3D - 110 187 IPR012677 -
Bva13g02973 304 SMART rrm1_1 111 180 IPR000504 GO:0003723
Bva13g02973 304 SMART rrm1_1 8 78 IPR000504 GO:0003723
Bva13g02973 304 MobiDBLite consensus disorder prediction 184 304 - -
Bva13g02973 304 MobiDBLite consensus disorder prediction 244 258 - -
Bva13g02973 304 CDD RRM1_SF2_plant_like 8 78 - -
Bva13g02973 304 CDD RRM2_SF2_plant_like 110 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02973 Bva-Chr13 21278756 21283575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02973 8 168 Eukaryotic Initiation Factors Gene Family AT1G71770 27.108 5.19e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02973 K12890 - gmx:100796900 334.724