Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02969 ATGAAGTTCTGCAAAAAATACCGGGAGTACATGCAAGGTCAGGAGAAGACACTACCTGGGGTTGGCTTCAAGAAGCTCAAGAAGATATTGAAGAAGTGCAGGAGACACGTTCAATCACAGAAGTGCCTTAATGAAGCCCTAGCCGTCCAAACCTGCCCCAACAGCAATTGCCCAGGTAATCAAAATGTCACCTTTTTCCCCAGGAGACACGGTCAATCACAGAAGTGCCTTAATGAAGCCCTTGCCGTCCAAACCTGCCCCAACAACAATTGCCCAGTTTGCGATGGGACCTTCTTCCCTTCTCTTCTCAATGAAATGTCACAAGTAATAGGCTGCTTCAACCATCGTGCACAGAAATTGCTGGAGCTACATCTTGCTTCTGGATTCAGAAAGTACCTTTTCTGGGTCAAAGGCAAATGGCAGCGGGACCATGCAGCTCTAACTCAAGAAGGCAATGACCTGGTTACTTATGCACTGATAAACGCCGTTGCAGTTCGCAAAATACTAAAGAAATATGATAAGATTCATGTTTCCAATCAAGGGCAATTGTTTAAGTCACAAGCACAGAGGATGCACATGGAAATTCTTCAGAGTCCTTGGCTTTGTGAGCTTATGGCCTTCTACATTAATTTAAGGGAAACCAAGGCGGCCAATTTAACGAAGGGGTCTGCTTTATTTGATGGATGTTCCCTCGAAATTAATGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCTGTCAAGCTTGATATTGACTTGACTTGCTCTATATGCTTGGAGACAGTATTTGATCCAGTTTCTCTTACTTGTGGCCATATATTCTGCTACATGTGTGCTTGCTCAGCTGCATCAGTAAGTATTGTTGATGGACTTAAGACAGCAAATCCTAAAGAAAAATGCCCTCTATGCCGGGAGGAAAGAGTTTATGAAGGTGCTGTTCACTTGGAAGAACTAAGTATTCTCTTAAGCCGAAGCTGCCAGGAATACTGGGAACAAAGGCTGCAGGCGGAGAGGGTTGAGAGGGTGAAGCAAATAAAGCAGCACTGGGAAACTCAGTGCAGAGCATTCATAGGCGTCTG 1082 0.4445 MKFCKKYREYMQGQEKTLPGVGFKKLKKILKKCRRHVQSQKCLNEALAVQTCPNSNCPGNQNVTFFPRRHGQSQKCLNEALAVQTCPNNNCPVCDGTFFPSLLNEMSQVIGCFNHRAQKLLELHLASGFRKYLFWVKGKWQRDHAALTQEGNDLVTYALINAVAVRKILKKYDKIHVSNQGQLFKSQAQRMHMEILQSPWLCELMAFYINLRETKAANLTKGSALFDGCSLEINDGKPSLTCELFDSVKLDIDLTCSICLETVFDPVSLTCGHIFCYMCACSAASVSIVDGLKTANPKEKCPLCREERVYEGAVHLEELSILLSRSCQEYWEQRLQAERVERVKQIKQHWETQCRAFIGV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02969 360 Pfam Zinc finger, C3HC4 type (RING finger) 256 304 IPR018957 GO:0046872
Bva13g02969 360 SUPERFAMILY RING/U-box 249 308 - -
Bva13g02969 360 SMART ring_2 256 304 IPR001841 -
Bva13g02969 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 358 IPR013083 -
Bva13g02969 360 ProSiteProfiles Zinc finger RING-type profile. 256 305 IPR001841 -
Bva13g02969 360 ProSiteProfiles SPX domain profile. 1 186 IPR004331 -
Bva13g02969 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 360 - -
Bva13g02969 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 360 IPR033326 -
Bva13g02969 360 ProSitePatterns Zinc finger RING-type signature. 271 280 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02969 Bva-Chr13 21264631 21267337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02969 253 307 C3H Transcription Factor Family AT4G28270 38.333 2.74e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02969 K16275 - gmx:100787904 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02969 13 21264631 21267337 Bva13g02969 13 21264631 21267337 ECH