Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02938 ATGTCAAATATTTCAGGTGAGGAAGGAAGTTTCTCCTCAGGAAACACTGGGGAAGAAGTTCATCAAGAAAACGAGCAGCAACAGCTACAGAACCATTTGCACAACTCAAGTTCAGGACCTTCTGGTGCTTGCCATAGCAATGGCTCTTCTAATCAACAGCAACAACAGCCAGCAAAGAAGAAACGAAATCTTCCAGGAACTCCAGGCATGCAAATTCGACAACCTCTGAATTACCTTGATTATTATCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTCTGCGAGATCTGCAACAAAGGTTTCCAGAGGGACCAAAACCTTCAGTTGCACAGGAGAGGTCACAATCTTCCATGGAAACTGAGGCAGAGAACGACCACGGAGGTCAAGAAACGGGTCTTTGTATGCCCAGAACCATCATGCGTGCACCATAACCCGGCTCGTGCACTGGGAGACCTCACTGGTATCAAAAAGCATTATAGCAGGAAACATGGCGAGAAGAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCAGTTCAATCTGATTGGAAAGCCCACCAGAAAACCTGTGGTACAAGAGAATATAAATGTGACTGCGGAACCATTTTTTCCagGAGAGATAGTTTTATCACCCACAGAGCTTTTTGTGATGCATTAACTGAGGAAAACAACAGAGTGAACCAGGGATTAAGCAGTGGAATGCCGCCAAACTTGCAAAATCAAATGCCAGATCTTATGTCTACAATACCTATGAGCACCAACACAGCATCTGAATATAGCAACTACGACCCCAAGAACCCAATGAAATCCCTGCCTCAAGAACTTGTCTCTATGCCATTCAACCCCATGAGCATGGGTGGAGGCATGTTCTCGAACAGTTCAGGTTCACTTTTTGGTGGTCCAAAAAGCAATTCTCCCTCCTCTTCTACTCTTCAGCTCAGTTCCAACAGCTCCTCTGGCCTCAATTACTTCACAGACAGCAAAAATGGAGGACCAATATCTGGGTCAGCCCACATGTCAGCAACAGCTTTATTACAGAAAGCAGCTCAAATGGGTGCAACTGCAAGCAATAGCATTAACTCTCCCATGATGCAGAAAAGCTTTGTTAGTAGCATGACTGGTCCTGACCCAATTAGAACACCACCATATTCTGGTGCTATGCAGCATCATAACCCCTCATATGACCACTTCCATCCTCACCCTGATCAATCCCACATGGCAGGGATTAATGGCAGTGGAGCATTCACTAGCCCGTTGTTTCAAAAGGGCCAACAAGAAATGTCACAACTACTTGATCCTGATACTCCTGGACCAACAATGAATGAGATGGGAATGTTCACCCAAATATTCAATATCGGCAATGATCATAACCCAGGATTAATCAAGAATATGGAACGAGAAGCTAGTAACAGCACGAGTTTGATCCATGGAAGAGATGCAGCAGAAGGGAACCCAATGGGGCAATCGAGGTTCGGAGGGAGTGACATGACAACGGTTCATGACTTTTTGGGTGTTGGTGTTCCAAATTCAAGTACAGGGAATTTGCACGAATCGCAACAGCATCAACAAGAAAGACTGGAGTTGGAAGCAATAAACCAGCAGAGGTTACCACTTATAAATCACTTTCACCATCACCTTCCTCATGGCGATTCAACTATGGAGAAACCCATTTGGGATGTGTG 1709 0.4447 MSNISGEEGSFSSGNTGEEVHQENEQQQLQNHLHNSSSGPSGACHSNGSSNQQQQQPAKKKRNLPGTPGMQIRQPLNYLDYYPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVKKRVFVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLSSGMPPNLQNQMPDLMSTIPMSTNTASEYSNYDPKNPMKSLPQELVSMPFNPMSMGGGMFSNSSGSLFGGPKSNSPSSSTLQLSSNSSSGLNYFTDSKNGGPISGSAHMSATALLQKAAQMGATASNSINSPMMQKSFVSSMTGPDPIRTPPYSGAMQHHNPSYDHFHPHPDQSHMAGINGSGAFTSPLFQKGQQEMSQLLDPDTPGPTMNEMGMFTQIFNIGNDHNPGLIKNMEREASNSTSLIHGRDAAEGNPMGQSRFGGSDMTTVHDFLGVGVPNSSTGNLHESQQHQQERLELEAINQQRLPLINHFHHHLPHGDSTMEKPIWDV 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02938 569 Pfam Zinc finger, C2H2 type 101 123 IPR013087 -
Bva13g02938 569 SMART c2h2final6 142 172 IPR013087 -
Bva13g02938 569 SMART c2h2final6 177 197 IPR013087 -
Bva13g02938 569 SMART c2h2final6 101 123 IPR013087 -
Bva13g02938 569 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 123 IPR013087 -
Bva13g02938 569 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 539 - -
Bva13g02938 569 SUPERFAMILY beta-beta-alpha zinc fingers 100 198 IPR036236 -
Bva13g02938 569 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 539 - -
Bva13g02938 569 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Bva13g02938 569 Gene3D Classic Zinc Finger 156 235 - -
Bva13g02938 569 MobiDBLite consensus disorder prediction 1 71 - -
Bva13g02938 569 MobiDBLite consensus disorder prediction 303 327 - -
Bva13g02938 569 MobiDBLite consensus disorder prediction 1 61 - -
Bva13g02938 569 Gene3D Classic Zinc Finger 84 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02938 Bva-Chr13 21136535 21138917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02938 33 365 IDZ Gene Family AT3G50700 52.661 5.47e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva13g02938 zf-C2H2 0.0059 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02938 - - gmx:100782774 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02938 13 21136535 21138917 Bva13g02938 13 21136535 21138917 ECH