Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02933 ATGATCACATTGGAGGTGGTTTTCACAGATATAGCGTGGATGAGTGCTGGCATGGATATCCTTGATTATTTGAGGAGAGACATGATCGGTCCAGAAGGTGAAATATTTTCGGCAGAGGATGCTGATAGTGCAGAGACTGAAGGTGCTACAAGGAAAAAGGAAGGGCGTTTTACATATGGACCAGCAAAGAGgttgAAGACATACTTGGGAAAGAATGTTCTTATAGAGAGAAAGGATCCTTCCGAATTGGCGTCAGAAAATGGCATGTCTGTTGAAAAATACCATGAAATTCTTGGAGAATGTAGGTGTAAGCTGTTTAGAGTAAGATCAAGGCGGCCAAGGCCACATTTGGATGATAAGGTTATTGTGTCATGGAATGGACTGGCAATTTCATCTTTTGTCAGAGCCTCTAAGATTCTCAACAGTGAAGCTGGAGGGACCAAATTCAACTTTCCTGTTGTTGGCACTGAACCAAAGGAATACATGGGAATTGCAGAAAAAACCGCACACTTCATTAGGAATAAACTCTATGACGTGGAGACACGTAGGCTACAGCGTAGTTTCAGAAATGGTCCATCTAAAGCTCCTGGTTTTTTGGATGACTATGCTTTTCTAATTTCCGGTTTGCTGGATCTCTTTGAGTTTGGTGGTGGGATTAACTGGCTTGTGTGGGCAATTGAATTGCAGGAAAGCCAGGATGCATTATTTCTTGATAAGGAGGGAAGAGGGTATTACAATACTCCAGGAGAAGATCCTTCAGTTCTTCTCCATCTGAAGGAAGACCATGATGGTGCAGAACCCTCTGGAAATTCAGTTTCTGCCAttaatcttattagattaGCTTCGATGGTCACTCGAAGTAAGGCAGAGTACTATAGGCGAAATGCAGAACATCTtctgGCGGTTTTTGAGACTAGATTGAAAGAGATGGCCTTTAATGTGTTGTGCTGCAGACATGTTATTCATGTAGATCCCAACAACAGGCAAGAGATGGAATTTTGGGAAGCAAATAACAGCAACATTGCACTCATGGCGAAAAATAACCATGCAGTTGACAAGGCTTCGGGTCGAAATGTCCGAACCCTACTCGGTCAAGTTGTTGGTCCCGACTTCCCAAAACCCATAGCCATCccttttaaaattctttcaagGAACTGGGAAGCTTGGCAATTGCCATCACTCTTATCCACTGCAACCATCTGCGATGAAAGCATTTCAAAGCCTCAGAATCGACCACTTCGCAGACCAATCACCCTCAAAATCTCCGCAGGTGAATCCAACTTCACTGTCTCTTACCTCATAGACACTTGTGGGTTGGCTCCAGAAGCTGCAGTTTTAACTTCCCAAAAGGTGCAGCTCCATTCGCCAGAAAGGCCCAATTCTGTCCTAACTCTCCTAAGAAATCATGGATTCTCAAAATCCCAGATTTCGAAAGTTGTCAGGAAGCGCCCACAACTCTTGTTAGCTAATCCAAACGATACCCTTTCGCCCAAACTTCAGTTTTTTAGGTCTATTGGGGTTTCCAATTCTGACCTTGCTAGAACTGTCACAGCAGATCCAACTATACTGACAAGAAGCTTAGAAAAACAGATAATACcttcttataattttctcaaGGGGGTGCTGCATTCAGATGAAAAGGTTGTTGCGGCGTTCAAGCGCACGTCTTGGATTTTTCTTGAAGACCAAACTAAGAATCTCATGCCAAATCTTGCTGTCTTGCGAGAAATGGGTGTGCCAGAATCATGCATTGCCTTGTTGCTAACTCATTTTCCGGAAGCTTTGATGCAAAAGAAGGAAGAGTTTATTAAGATTGTCGAAGAGATTAAGGAAATGGGATTTAATCCAAATAAGAGTACATTCGTTTTAGCGATTCACGTTCTCTCAGGGGAAAGTAACAAGTCAATATGGAACCGATGCTTCGAGGTTTATCAGAGGTGGGGTTGGTCCGATGAAGTCATTCTATCGGCATTTAAGAAGCATCCACAATGTATGATACTGTCggagaataaaataatgaaggcAATGGATTTCCTTGTGAACAAGATGGGTTGGCCTTCAGAGATGATTCCAAGATGCCCTGTGGTCCTATTTTTCAGCTTGGAGAAGAGAATCAAACCAAGGTGTTCAGTTGTTCAGGTTTTATTGCGGAAGGGATTGATTAAGAGGACTTTGAGCTTGAGCACTGTCCTCTTACCCGACGAGAATCGTTTTTTGGAGAAGTTCGTGAGCAAGTATGATAAGGAAGTGCCTCAGTTGTTGAGTGTGTATCAGAAGAAGATTGATTTTGAGAGCCTGATTTG 2303 0.4173 MITLEVVFTDIAWMSAGMDILDYLRRDMIGPEGEIFSAEDADSAETEGATRKKEGRFTYGPAKRLKTYLGKNVLIERKDPSELASENGMSVEKYHEILGECRCKLFRVRSRRPRPHLDDKVIVSWNGLAISSFVRASKILNSEAGGTKFNFPVVGTEPKEYMGIAEKTAHFIRNKLYDVETRRLQRSFRNGPSKAPGFLDDYAFLISGLLDLFEFGGGINWLVWAIELQESQDALFLDKEGRGYYNTPGEDPSVLLHLKEDHDGAEPSGNSVSAINLIRLASMVTRSKAEYYRRNAEHLLAVFETRLKEMAFNVLCCRHVIHVDPNNRQEMEFWEANNSNIALMAKNNHAVDKASGRNVRTLLGQVVGPDFPKPIAIPFKILSRNWEAWQLPSLLSTATICDESISKPQNRPLRRPITLKISAGESNFTVSYLIDTCGLAPEAAVLTSQKVQLHSPERPNSVLTLLRNHGFSKSQISKVVRKRPQLLLANPNDTLSPKLQFFRSIGVSNSDLARTVTADPTILTRSLEKQIIPSYNFLKGVLHSDEKVVAAFKRTSWIFLEDQTKNLMPNLAVLREMGVPESCIALLLTHFPEALMQKKEEFIKIVEEIKEMGFNPNKSTFVLAIHVLSGESNKSIWNRCFEVYQRWGWSDEVILSAFKKHPQCMILSENKIMKAMDFLVNKMGWPSEMIPRCPVVLFFSLEKRIKPRCSVVQVLLRKGLIKRTLSLSTVLLPDENRFLEKFVSKYDKEVPQLLSVYQKKIDFESLI 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02933 767 SMART mt_12 477 508 IPR003690 GO:0003690|GO:0006355
Bva13g02933 767 SMART mt_12 687 721 IPR003690 GO:0003690|GO:0006355
Bva13g02933 767 SMART mt_12 513 545 IPR003690 GO:0003690|GO:0006355
Bva13g02933 767 SMART mt_12 585 615 IPR003690 GO:0003690|GO:0006355
Bva13g02933 767 SMART mt_12 549 580 IPR003690 GO:0003690|GO:0006355
Bva13g02933 767 SMART mt_12 655 686 IPR003690 GO:0003690|GO:0006355
Bva13g02933 767 SUPERFAMILY Six-hairpin glycosidases 16 265 IPR008928 GO:0005975
Bva13g02933 767 Gene3D Transcription termination factor 3, mitochondrial 526 754 IPR038538 -
Bva13g02933 767 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 401 760 - -
Bva13g02933 767 Pfam mTERF 463 616 IPR003690 GO:0003690|GO:0006355
Bva13g02933 767 Pfam mTERF 634 738 IPR003690 GO:0003690|GO:0006355
Bva13g02933 767 PANTHER CGI-12 PROTEIN-RELATED 401 760 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02933 Bva-Chr13 21092473 21097288 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva13g02933 mTERF 5.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02933 - K15032 pop:7491317 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02933 13 21092473 21097288 Bva13g02933 13 21092473 21097288 ECH