Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02931 ATGGAGTTATACGGACGCAATCCGGCGAGGAATGGGTCGCAATCGGGTAATCAATCTGAATGGCGCCCGGCAAGTGACGAGACTGGCCTTGAAGAATCGATGTGGTACTTGGGACTTGGTAGCAGCGAATCATACCCGGAGCGACCCGGCGTACCCAATTGTGTGTATTACATGCGAACTGGGTTTTGTGGATATGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGCTGCAGCTGTTAGAGCCACAGGGGAGTACCCAGAACGGGTGGGTGAACCTCCATGTCAGtattatttaaaaactgGAACCTGTAAATTCGGTGCATCCTGTAAATTTCACCATCCCAAACATGGAGGTGGATCTTTAGGCCAAGCTCCGCTAAATATTTATGGATACCCGTTACGGCCGGGTGAGAGAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCACCATCCTCAACCTGCTGACACATCAGGGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTGTCTGAACAGTATGGAGGAGCATCCTCCAGCTTGAGAGTCGCTAGGCCTCCAATGCTGCCTGGTTCATATGTGCAAGGAGCTTATGGTCCTGTACTTCTTTCCCCAGGAGTTGTTCCGTTTCCAGGATGGAATCCTTACTCGGCACCTGTAAGCCCTGTCTTGTCTCCTGGTGCTCAACCTCCTGTTGGAGCTACTTCTCTCTATGGTGTGACCCAGCTATCTTCAACAACATCAGCGTTTGCTAGACCATATAATCCTCTTCCTTCTTCCAGTGTCCTTTCTGGCAGTAGCCCAAAGGGGCCAGTATTTCCTGAAAGACCTGGTCAACCTGAATGCCAATACTATCTGAGAACAGGGGATTGTAAGTTTGGATTATCTTGTCGGTTTCATCATCCTCGGGACCAGGCTGTGACACGGCCACTTCTCAGTCCCATTGGTCTTCCTTTACGTCCGGGAGCACAACCATGTGCATTTTACTTGCAAAATGGGCATTGCAAGTTTGGGTCTACATGCAAATTTGATCATCCTTTGGGGTCGGTGAGATACAGTCCATCAGCATCTTCTCTCATTGATATGCCAGTGACTCCATACCCAGTTGGGTCCTTGCTATCTACCCTAGCTCCTTCAACTACCTCTTCGGATCTTCGACCTGAACTAATTTCAGGGTCGAAAAAGGAATCCTTCACGAGCAGATTGCCTTCTTCTGGAAATGGTTCCAGCAATTCTGtcagtttaatttttacacaGAGTGGATCTGTCTCACTCACTGATGTGCAACTATCAAGTCAGAGTTCTGCCCCTTTAAGTAGTAGCAGAAGCACTAGATA 1397 0.4775 MELYGRNPARNGSQSGNQSEWRPASDETGLEESMWYLGLGSSESYPERPGVPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLGQAPLNIYGYPLRPGERECSYYLKTGQCKFGITCKFHHPQPADTSGPASAPQFYQQVQSPTVPLSEQYGGASSSLRVARPPMLPGSYVQGAYGPVLLSPGVVPFPGWNPYSAPVSPVLSPGAQPPVGATSLYGVTQLSSTTSAFARPYNPLPSSSVLSGSSPKGPVFPERPGQPECQYYLRTGDCKFGLSCRFHHPRDQAVTRPLLSPIGLPLRPGAQPCAFYLQNGHCKFGSTCKFDHPLGSVRYSPSASSLIDMPVTPYPVGSLLSTLAPSTTSSDLRPELISGSKKESFTSRLPSSGNGSSNSVSLIFTQSGSVSLTDVQLSSQSSAPLSSSRSTR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02931 465 SUPERFAMILY CCCH zinc finger 343 371 IPR036855 GO:0046872
Bva13g02931 465 MobiDBLite consensus disorder prediction 8 24 - -
Bva13g02931 465 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Bva13g02931 465 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Bva13g02931 465 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Bva13g02931 465 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Bva13g02931 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Bva13g02931 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Bva13g02931 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Bva13g02931 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 366 IPR000571 GO:0046872
Bva13g02931 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Bva13g02931 465 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Bva13g02931 465 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Bva13g02931 465 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 17 454 - -
Bva13g02931 465 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Bva13g02931 465 MobiDBLite consensus disorder prediction 1 27 - -
Bva13g02931 465 Gene3D - 295 377 - -
Bva13g02931 465 Gene3D - 92 176 - -
Bva13g02931 465 Gene3D - 43 87 - -
Bva13g02931 465 PANTHER PROTEIN PHOSPHATASE RELATED 17 454 - -
Bva13g02931 465 SUPERFAMILY CCCH zinc finger 142 167 IPR036855 GO:0046872
Bva13g02931 465 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Bva13g02931 465 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Bva13g02931 465 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Bva13g02931 465 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Bva13g02931 465 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Bva13g02931 465 SMART c3hfinal6 139 166 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02931 Bva-Chr13 21084252 21088603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02931 1 420 C2H2 Transcription Factor Family AT5G18550 54.091 1.74e-139 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva13g02931 zf-CCCH 3.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02931 - - gmx:100812475 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02931 13 21084252 21088603 Bva13g02931 13 21084252 21088603 ECH