Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02919 ATGAGCAATTCTCCGAGACACCCACATCCTTCGTGTAAAGATCAAAAGCAGCGAGCTTGTGACTATTGCGAAGGCTCCACTGCTCTTCTCTACTGCCGAGCTGATTCTGCAAAGCTATGTTTCTCTTGCGATCGAGAAGTTCATTCCACCAACCAGCTTTTCTCAAAGCACACTCGCGCTCTCCTTTGTGACGCTTGTGACGCTGCCCCTGCTACAATACTCTGTTCTACAGTAAACTCTGTTCTTTGCCAAAATTGTGACTGGGAAACGCACAATTTGTCGCTGTCTCCAGTGCATGACCGAAGACCTCTCGAAGGTTTTACTGGGTGCCCTTCTGTGAATGAATTGTTAACAATTCTGGGGTTTGAAGATTTGGGCAAAAAAGCTTTGCTTTTTTCTCATGAAAGCGGTGGTCGTGGCGTTGACGCCGATGCTACCAGTCATGGGTTTCTGGGTTCTGAGCTTGAAGGGTTCTCGGATTTGTTGGTATGGAATGCTCCTGCCGTCGTCAGCCTTGATGATTTCATTGCTTCTACCAATTCGTCTCATAATTACCAAGCTATGGAGGTTCCTCCTCTTCCTAAGAATCGCCAGGCTGCTTGTGGGCgacagaaagaagaaattatcagTCAGCTTCGTGAACTAGCAAAGTCTGAACCCAACTTGAATGAAGATGCAGATGCTGAACGCCTGAGCAATATGCATCCTTTGGTGCCTGAACACTATGTGCAGTCACAAGATATGGCCACAAGTTTTGAACGTGACATTGAGACTGATATTTGTCCTACTTACGAGGTAGGTGATTTTCGGGGGCACAAGAATAGCAGTGAGTCTGCAAATCAAGTTGTTCCTCCTAATACAGCATTAAGAACTTACTCAGAGGAAGTTCCCGATAAACATTCAATTTCTGCTGTGTACAATGGAGGggaaacacaaaataattttaactgtGAATATTTATCAACTGCACGCAGAGCTGCCCCGTATGAGTTAACGAGCCAAGAAAGAGATTCTGCAATATTGCGGtataaggagaagaagaaaacaagaagATATGACAGGCACATAAGGTATGAATCACGAAAAGTTCGAGCAGAAAGCAGGACAAGAATAAAGGGCCGATTTGCCAAGATTGAACACGAAAAACAGAGAATGTG 1157 0.4278 MSNSPRHPHPSCKDQKQRACDYCEGSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRALLCDACDAAPATILCSTVNSVLCQNCDWETHNLSLSPVHDRRPLEGFTGCPSVNELLTILGFEDLGKKALLFSHESGGRGVDADATSHGFLGSELEGFSDLLVWNAPAVVSLDDFIASTNSSHNYQAMEVPPLPKNRQAACGRQKEEIISQLRELAKSEPNLNEDADAERLSNMHPLVPEHYVQSQDMATSFERDIETDICPTYEVGDFRGHKNSSESANQVVPPNTALRTYSEEVPDKHSISAVYNGGETQNNFNCEYLSTARRAAPYELTSQERDSAILRYKEKKKTRRYDRHIRYESRKVRAESRTRIKGRFAKIEHEKQRM 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02919 385 ProSiteProfiles Zinc finger B-box type profile. 58 104 IPR000315 GO:0008270
Bva13g02919 385 Pfam CCT motif 336 377 IPR010402 GO:0005515
Bva13g02919 385 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Bva13g02919 385 ProSiteProfiles CCT domain profile. 336 378 IPR010402 GO:0005515
Bva13g02919 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 15 380 - -
Bva13g02919 385 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Bva13g02919 385 CDD Bbox1_BBX-like 19 62 - -
Bva13g02919 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 15 380 - -
Bva13g02919 385 SMART bboxneu5 63 104 IPR000315 GO:0008270
Bva13g02919 385 SMART bboxneu5 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02919 Bva-Chr13 21045403 21047824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02919 15 351 C2C2-CO-like Transcription Factor Family AT2G47890 42.105 1.46e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva13g02919 zf-B_box 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02919 - - gmx:100817838 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02970 04 24994786 24997347 Bva13g02919 13 21045403 21047824 BWGD
Bva13g02919 13 21045403 21047824 Bva13g02919 13 21045403 21047824 ECH