Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02913 ATGTCGTTTAGGAGCATCATACAGGATATGAAGGGTGAGATTGGGAATATTTCCCGGAAAGgatttgatgttaaatttgGGTATGGGATGAGATCAAGATCACATTCACACCGTGATGCTCAGGATATTTCGGTGGTACTTGATGGTTTGAAGCAGAGTTGTTGGGCTAACATGCCGCCAGAGCTCTTGAGGGATGTGTTACTGAGGATAGAGACCTCTGAAGATGCCTGGCCTGCCCGGAAATACGTGGTTGCCTGTGCCAGTGTTTGCCGCAGTTGGAGGGAAATCGTGAAAGAAATTGTCAAATCCCCTGAAGTATCAGGCAAATTGACATTCCCAATTTCCTTAAAGCAGCCCGGTCCGAGAGGCTCTCTTCTTCAGTGCTATATCAAACGGAATCGCACGAAACAAACATATTGCTTGTTTCTTGGTTTAAACCAAGCTTCTACAGAAGATGGCAAATTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACCGACTACATCATTTCTCTAAATTCTGATGATGTATCAAGAGGGAGTAGCACATACATTGGAAAGTTGAGATCAAACTTTCTGGGTACCAAATTTACCGTGTATGATGCACACCCTCCAGTAGGTGCAGCCAAAGTCACTAAGTCTCGTTCCACTAGACTAGTTAATCTCAAGCAAGTCTCTCCAAGAGTTCCTGCTGGCAACTATCCCATTGCGCACATCTCATATGATCTGAATGTCTTGGGCTCCAGGGGCCCTAGGATAATGCAGTGCACTATGGATGCCATCCCTGCCTCAGCTGTTGAACCAGGAGGCGCGGCCCCCACACAGACTCAATTCCTGCATACCAGAATTGATTCTTCTCCATCTATTCCTTTCTTTAGATCAAAATCGACCCGCATAGAGAATTCTCTATCTGTACCCTTGTCCAACCAAAAAGAGGGAATTCTAGTTCTACGGAACAAGTCCCCTAGGTGGCATGAACAACTCCAATGCTGGTGTCTAAACTTCAATGGACGAGTGACAGTTGCTTCGGTTAAAAATTTCCAGTTGGTTGCTTCACCAAAGAACGGAGTTTCTGCGCAGGCTCAGGAAAATGTTATTCTCCAGTTTGGAAAAGTTGGGAAGGATGTGTTCACCATGGATTACCAGTATCCTATCTCAGCTTTTGAAGCATTCGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATG 1223 0.4505 MSFRSIIQDMKGEIGNISRKGFDVKFGYGMRSRSHSHRDAQDISVVLDGLKQSCWANMPPELLRDVLLRIETSEDAWPARKYVVACASVCRSWREIVKEIVKSPEVSGKLTFPISLKQPGPRGSLLQCYIKRNRTKQTYCLFLGLNQASTEDGKFLLAARKCRRPTHTDYIISLNSDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPVGAAKVTKSRSTRLVNLKQVSPRVPAGNYPIAHISYDLNVLGSRGPRIMQCTMDAIPASAVEPGGAAPTQTQFLHTRIDSSPSIPFFRSKSTRIENSLSVPLSNQKEGILVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSAQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02913 407 Pfam F-box domain 55 101 IPR001810 GO:0005515
Bva13g02913 407 PANTHER TUBBY-RELATED 1 406 - -
Bva13g02913 407 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Bva13g02913 407 Pfam Tub family 116 402 IPR000007 -
Bva13g02913 407 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 406 - -
Bva13g02913 407 SUPERFAMILY Tubby C-terminal domain-like 104 407 IPR025659 -
Bva13g02913 407 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Bva13g02913 407 PRINTS Tubby superfamily signature 385 407 IPR000007 -
Bva13g02913 407 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Bva13g02913 407 PRINTS Tubby superfamily signature 364 383 IPR000007 -
Bva13g02913 407 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bva13g02913 407 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Bva13g02913 407 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Bva13g02913 407 ProSitePatterns Tub family signature 2. 392 407 IPR018066 -
Bva13g02913 407 Gene3D Tubby Protein; Chain A 113 407 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02913 Bva-Chr13 21014129 21017853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02913 1 407 TUB Transcription Factor Family AT2G47900 76.341 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva13g02913 Tub 9.9e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02913 K19600 - gmx:100809257 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02913 13 21014129 21017853 Bva13g02913 13 21014129 21017853 ECH