Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02908 ATGAAGAAGGGAAGAGAAATGGAGGGTATAGCCGCTGCTAACGACGGCTTTGCTCCTAAGTCGGCTGAAAATGCCATTGGAATTCCGAGACGTAGCTATGGTGGCTTCCCCCCTCACTTGAACCATGACCAAGGTGAGAATGATGATTTGTACGATGAACTGTGGCGCGCATGCGCCGGCCCCTCTGTTTATGTCCCGCGGGCTGGCGAAAAGGTTTTTTACTTCCCTCAAGGTCATTTGGAACAGGTTGCTGCATTTGCTGATCAGCGAGAGATTCACATGGAAATGCCCGTATATGATTTGCCTTCTAAGATCCTCTGTAGGGTAATGTGTGTTCAGTTCAAGGCGGAAGCTCACACAGATGAGGTCTTTGCACAAGTTACTTTGCTTCCAGAGCCAACGCAAGACGAACTTAGTTCTGAGGACAAAGACGCTTGTCGGCTACCCTGCAGAGCTTCTTTCTGCTCCTTTAGCAAGAAACTCACTCCATCAGACACAAGTGCACATGGTGGATTCTCTATTCCTAGGAGACATGCCGATGAATGCTTCCCTCCTCTGGATATATCTCAGCAATCACCATCACAGGAGCTAATTGCAAAGGACTTGCATGGGTTTGAGTGGCATTTTCGCCATATATTTCGTGGTCACCCAAGACGGCACTTGCTTACTAGTGGTTGGAGCACATTTGTGAATTCAAAAAAGCTTGTTGCAGGAGATGCATGCATTTTTCTTAGTGGGGAAAACGGAGAACTTCGTATTGGAATCCATCGAGCAAGGAAACAACACAAGAGTGCATCGACATCCGCATCTGTGATATCGGGCCATAGTATGCAACTTGGAATATTGGCTAGTGCTTCCCATGCTGTATCTACAGGATCCATGTTCAATGTATATTACCATCCTTGGACAAATCCCTCTGAGTTCATTATTCCACTGGATCAATACATTAAGTCAAGTGAAGTGGACTACTCAGTTGGAACGAGAGTACAAATACGATATGGAGCagaagattttaataaaagaagATATGCTGGTACCGTTATTGGTGTTGAAGAGATTGACTGTGCTAGATGGCCTGGTTCAGACTGGAAATGTCTCAAGGTGCAATGGGATGGCATACTAGACACATATGTGCATCCTGAAAGAGTTTCTCCTTGGAGCATTGAGCCCTTGGGATCTGCCAAGAAGAAACACATTTCTATTCTTCCACTACCGAAGAGGGCACGTGCACTTGACCCACCATTGCCCGGACGTGGTTTTGCCAAGGAGGACATAGTTCAGTATTCGGTCAAGCATGCAGCTCAGAGATACGAAAAGGACTTACAAGGTCAAGATTACAATGAAGAAGGTTCTTCACAGCATGCACAACCACCACCATCGTCAACAAATGCACTTCTACCATCAAATGTCACCTCCAATGACTCACAGTTGGGGATGAAGAGTCAGCTGCAGTTTGTAACGCAAAATCCTTTGCATCAATCTCTTGGCAACTCAATCCCATTTTCAGATGATGACATATCAACTTCAAGCCTCCCCAGTCGCTCCCCAGTCTTTACCACATATGGAACATGTAATAATGTCTCAGTCAAGAGAGATATTTCAATCTCAAATGTGAACTCCTGTGATTCTGAATCCCATGGATGGCGTGCATCTGAATCTAGGGATGAGAATGAAGTTCTTTTTGGCCATCCTCATGGTTACAGTAGATACAAGCTTTTCGGGTTCAACTTAATTGGTAACCACCCGGAGCTCCCTTCACCACAACTTGCTGCTTATAGCAAGAATTCAAGTCCGCCTTCTGTTACTCCAATGTCCCAGTCAAGTGTTTCCGCAACTATCCCTGTATCAGAACCAAGTAAGAGTATTTCAGGTGTAACCTCGggggaaaaaaacaagaaatactGCTCTGTTAATAGTAGGAGTTGCACTAAGGTGCTTAAGCATGGAACTGCTCTTGGAAGATCAATTGACCTCGCACGTTTTCCGGGATATGAAGAACTCATTGCTGAACTTGATCGGATGTTTGATTTTGGAGGAAGCTTGATCAACGGAAGCAGTGGATGGCAGGTGGCCTTCACAGATGATGATGGAGACATGATGCTGTTAGGAGATTACCCATGGCAGGATTTCCAGTCCATGGTGCAAAAGATGATCATCCGTCCAAAGGAGGGAATGAGCAAGATAAGATG 2189 0.4481 MKKGREMEGIAAANDGFAPKSAENAIGIPRRSYGGFPPHLNHDQGENDDLYDELWRACAGPSVYVPRAGEKVFYFPQGHLEQVAAFADQREIHMEMPVYDLPSKILCRVMCVQFKAEAHTDEVFAQVTLLPEPTQDELSSEDKDACRLPCRASFCSFSKKLTPSDTSAHGGFSIPRRHADECFPPLDISQQSPSQELIAKDLHGFEWHFRHIFRGHPRRHLLTSGWSTFVNSKKLVAGDACIFLSGENGELRIGIHRARKQHKSASTSASVISGHSMQLGILASASHAVSTGSMFNVYYHPWTNPSEFIIPLDQYIKSSEVDYSVGTRVQIRYGAEDFNKRRYAGTVIGVEEIDCARWPGSDWKCLKVQWDGILDTYVHPERVSPWSIEPLGSAKKKHISILPLPKRARALDPPLPGRGFAKEDIVQYSVKHAAQRYEKDLQGQDYNEEGSSQHAQPPPSSTNALLPSNVTSNDSQLGMKSQLQFVTQNPLHQSLGNSIPFSDDDISTSSLPSRSPVFTTYGTCNNVSVKRDISISNVNSCDSESHGWRASESRDENEVLFGHPHGYSRYKLFGFNLIGNHPELPSPQLAAYSKNSSPPSVTPMSQSSVSATIPVSEPSKSISGVTSGEKNKKYCSVNSRSCTKVLKHGTALGRSIDLARFPGYEELIAELDRMFDFGGSLINGSSGWQVAFTDDDGDMMLLGDYPWQDFQSMVQKMIIRPKEGMSKIR 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02908 729 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Bva13g02908 729 ProSiteProfiles PB1 domain profile. 640 722 IPR000270 GO:0005515
Bva13g02908 729 MobiDBLite consensus disorder prediction 445 475 - -
Bva13g02908 729 Gene3D - 322 397 - -
Bva13g02908 729 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 39 728 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva13g02908 729 CDD B3_DNA 156 257 IPR003340 GO:0003677
Bva13g02908 729 SUPERFAMILY DNA-binding pseudobarrel domain 153 287 IPR015300 -
Bva13g02908 729 MobiDBLite consensus disorder prediction 446 475 - -
Bva13g02908 729 Pfam AUX/IAA family 681 719 IPR033389 -
Bva13g02908 729 PANTHER AUXIN RESPONSE FACTOR 39 728 - -
Bva13g02908 729 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Bva13g02908 729 Pfam Auxin response factor 285 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva13g02908 729 Gene3D - 155 258 IPR015300 -
Bva13g02908 729 SMART B3_2 157 259 IPR003340 GO:0003677
Bva13g02908 729 Gene3D - 635 729 - -
Bva13g02908 729 MobiDBLite consensus disorder prediction 592 624 - -
Bva13g02908 729 SUPERFAMILY CAD & PB1 domains 640 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02908 Bva-Chr13 20983214 20989242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02908 630 728 B3 DNA Binding Superfamily AT5G62000 51.515 4.22e-27 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva13g02908 B3 1.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02908 - - lja:Lj1g3v4764520.2 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02908 13 20983214 20989242 Bva13g02908 13 20983214 20989242 ECH