Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02871 ATGAAAATGATTCCTTGGAGTGGACTTAGTTGCTGCTTGAGTGCAGCTGCTCTTTACCTTCTGGGGAGAAGTAGTGGCAGGGATGCAGAACTTCTTAAATCCGTCACCCGGGTCAATCAATTGAAGGAACTAGCACAACTGTTAGATGCCGAAATATTACCTTTGGTTGTTACAATCTCTGGAAGAGTTATCTCGGAAACCCCAATTAACTGCGAGCTCAGCGGTTTAAGGGGGGTAATAGTTGAGGAAACGGCAGAACAACATTTTCTTAAGCACAATGACGCTGGTTCCTGGATACAAGATTCTGCTTTAATGCTATCAATGAGTAAAGAAAGCCCTTGGTATCTGGACGATGGGACTGGTCGTGTAAATGTGGTTGGAGCTCGGGGCGCAACAGGTTTTACATTACCTGTTGTAAGTGAGGCATTTGAGGAGTCAGGTAGGTCACTTGTACGTGGAACATTGGACTATCTGCAAGGTCTCAAGaTGCTTGGTGTCAAGAGAATTGAAAGGGTACTTCCAGTTGGCACTTCATTGACTGTTGTTGGTGAGGCTGCTAAAGATGACATAGGAACCATTCGGATTCAGCGACCTTACAAAGGCCCATTTTATGTTTCTCCCAAAACGATTGATCAGCTCATTGCAAATCTTGGAAAATGGGCAAGGTGGTATAAATATGCATCTTTCGGCTTGACGTTCTTTGGTGCTTACCTAATAGCTAAGCATGCTATTCAGTACTTCTTGGAAAGGCGGCGCCGTGGTGAACTGCAAAAAAGAGTTCTTGCTGCAGCTGCTAAGAGAGGACAAGATAATGAAGGTGAAAGGGCTGACATCTTAGCAGATGGTAACAAAAAAGATCGCCTGCCAGATTTGTGTGTCATATGCCTGGAGCAGGATTATAATGCTGTTTTTGTTCCATGTGGCCATATGTGCTGCTGTACAGCTTGTTCTTCACACTTAACAAGTTGTCCTCTTTGCCGACGACGGATAGACCAGGTAGTAAAGACTTTCCGTCATTG 1019 0.4455 MKMIPWSGLSCCLSAAALYLLGRSSGRDAELLKSVTRVNQLKELAQLLDAEILPLVVTISGRVISETPINCELSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKESPWYLDDGTGRVNVVGARGATGFTLPVVSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDIGTIRIQRPYKGPFYVSPKTIDQLIANLGKWARWYKYASFGLTFFGAYLIAKHAIQYFLERRRRGELQKRVLAAAAKRGQDNEGERADILADGNKKDRLPDLCVICLEQDYNAVFVPCGHMCCCTACSSHLTSCPLCRRRIDQVVKTFRH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02871 339 Pfam E3 Ubiquitin ligase 87 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Bva13g02871 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 338 IPR013083 -
Bva13g02871 339 PANTHER - 2 306 IPR044231 GO:0004842|GO:0016567
Bva13g02871 339 SUPERFAMILY RING/U-box 291 333 - -
Bva13g02871 339 CDD RING-HC_LRSAM1 291 330 - -
Bva13g02871 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Bva13g02871 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02871 Bva-Chr13 20799698 20804104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02871 3 273 C3H Transcription Factor Family AT1G63900 76.277 1.36e-148 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02871 K15688 - gmx:100803252 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02871 13 20799698 20804104 Bva13g02871 13 20799698 20804104 ECH