Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02850 ATGAATAGTAAAACAGCTGGCAGAGGTTTCAAAAGAAAGTTCCCACACAATGATCGATGGCAAGAACAAGGATCTTATAATGTGAATTCTGGGCCTTACGATAGAAACGCACCTCCACCTGGTTGGTTAGATTGCCCTGCATATGGTCAAGAAATAGGGTGCATAATTCCTTCGAAGGTTCCGCTTGGTGAATCCTTCAATGATTATATTCCAAGTGAAAAAAGATATTCTCCCAAGCAAGCTATTCTTCAACAAAGACGTTTAGGTAGAGAACTCGGTTTGGTGATTGATTTGACAAATACTACTCGTTACTATCGAGTATCAGATTGGACAGAAGAGGGGATTGGTCATGTCAAGATAAGATGCCAGGGAAAAGACTCTGTACCCGATGATGAATCTGTAAACAAATTTTGCAATGAGGTTCAGGATTTTTTCTCTCGAAGAGAAAATGCAAAGAAATATGTACTTGTCCATTGCACACATGGGCATAACCGCACGGGTTATATGGTTATTCATTTTATTGCGCGCTCAGAATCAATATCTGTAACCGAAGCAATAAATAAGTTCGCTTGGGCACGTCACCCCGGAATTTACAAGCAGGATTACATTGATGCGCTATACATGTGTTTTCACGAAAGGAAGCCTGAAGAAGTTGTTTGCCCTCCAACTCCAGAATGGAAGGGACTCTCTGATCCAGATTTTCATGGTGCAACTGCTGTTCCATCTGTGGATAATCATGGAGTTGTTCCTTATGTGGATAATGTGGTGAACAATGAAGTAATGACAAATGATGATGTTTTGGGAGATCCTCTACCTTCAAATCAGCTGCATTCGATGCGACAAGTCGTTTATCAACTGCTTAAGTTGGGTGCTGGGGGAAGAGGATGCTCGCAGTTTCCGGGCTCACATCCTGTTTCTCTCAATAGGGATAATCTGCAACTGTTACGACAACGGTATTACTATGCCACTTGGAAAGCTGATGGGACCCGATATATGATGCTGATTACTCGCGATGGGTGTTATTTAATAGacagaaaatttcatttcagaAGGGTCCATATGCGGTTTCCATGCAGATACTCAAATGGgGGTACTCCCGAGAGAAATCACCACTACACATTACTTGATGGGGAGATGATAATTGACACGGATCCTCATACACAGAAGCAGGAAAGAAGATACCTTATATATGATCTGATGGCAATTAATGAACGCTCTGTGACTGAGCTGCCATTCTATGAACGGTGGAAATTGCTGGAAAAAGAAGTGATTGAACCTCGTAACATGGAACGTGATGCTCTTTCAAAGAGTATAGATCCTTACTACAGATATGACTTGGAGCTGTTTAGTgTGAGGAGGAAGGGTTTTTGGTTGCTCTCTACTGTTTCAAAGCTCCTCAACAAATTCATTCCGCAACTCTCACATCCATCTGATGGTCTTGTATTCCAGGGTTGGGATGATCCTTATGTCCCTCGAACGCATGAAGGTCTTCTGAAGTGGAAATACCCCGATATGAACTCAGTTGATTTCCTCTTTGAGCTGGGAGCTGGTGATCGTCCCCTCCTTTTTCTGTATGAACGTGGAAAGAAGAAGTTGATGGAAGGGAatagagttatttttaaaGATGCATCAGACATATCTTCTTATTCAGGGATGATCATTGAGTGCTCCTGGGATTCTGAGAGGAGTCATTGGGTCTGCATGCGGACTAGGACCGACAAATCAACTCCAAACGAGATCAACACCTATAGAAAGGTCATGCGAAGCATAAAGGATAACATCACAGAAGATGTTCTGTTGAATGAGATCGATGAGATCATTCGCTTACCCTTATATGCCGACAGAATACAAAGAGATATCAAGGCCCACCAGCATATGGTCTCTGCGAGGCGCAGGTG 1898 0.4204 MNSKTAGRGFKRKFPHNDRWQEQGSYNVNSGPYDRNAPPPGWLDCPAYGQEIGCIIPSKVPLGESFNDYIPSEKRYSPKQAILQQRRLGRELGLVIDLTNTTRYYRVSDWTEEGIGHVKIRCQGKDSVPDDESVNKFCNEVQDFFSRRENAKKYVLVHCTHGHNRTGYMVIHFIARSESISVTEAINKFAWARHPGIYKQDYIDALYMCFHERKPEEVVCPPTPEWKGLSDPDFHGATAVPSVDNHGVVPYVDNVVNNEVMTNDDVLGDPLPSNQLHSMRQVVYQLLKLGAGGRGCSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITRDGCYLIDRKFHFRRVHMRFPCRYSNGGTPERNHHYTLLDGEMIIDTDPHTQKQERRYLIYDLMAINERSVTELPFYERWKLLEKEVIEPRNMERDALSKSIDPYYRYDLELFSVRRKGFWLLSTVSKLLNKFIPQLSHPSDGLVFQGWDDPYVPRTHEGLLKWKYPDMNSVDFLFELGAGDRPLLFLYERGKKKLMEGNRVIFKDASDISSYSGMIIECSWDSERSHWVCMRTRTDKSTPNEINTYRKVMRSIKDNITEDVLLNEIDEIIRLPLYADRIQRDIKAHQHMVSARRR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02850 632 Gene3D Protein tyrosine phosphatase superfamily 12 233 IPR029021 -
Bva13g02850 632 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 39 226 IPR029021 -
Bva13g02850 632 PANTHER MRNA-CAPPING ENZYME-LIKE 6 632 - -
Bva13g02850 632 PANTHER MRNA-CAPPING ENZYME 6 632 - -
Bva13g02850 632 Gene3D - 538 609 IPR012340 -
Bva13g02850 632 Pfam Dual specificity phosphatase, catalytic domain 91 206 IPR000340 GO:0008138|GO:0016311
Bva13g02850 632 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311|GO:0016791
Bva13g02850 632 PIRSF mRNA_capping_HCE 25 632 IPR017074 GO:0004484|GO:0006370|GO:0140818
Bva13g02850 632 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 135 204 IPR000387 GO:0016311|GO:0016791
Bva13g02850 632 Pfam mRNA capping enzyme, C-terminal domain 506 600 IPR013846 -
Bva13g02850 632 SUPERFAMILY Nucleic acid-binding proteins 504 617 IPR012340 -
Bva13g02850 632 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 268 502 - -
Bva13g02850 632 Pfam mRNA capping enzyme, catalytic domain 303 501 IPR001339 GO:0004484|GO:0005524|GO:0006370
Bva13g02850 632 CDD RNA_5'-triphosphatase 41 208 - -
Bva13g02850 632 CDD Adenylation_mRNA_capping 274 502 IPR001339 GO:0004484|GO:0005524|GO:0006370
Bva13g02850 632 Gene3D DNA ligase/mRNA capping enzyme 253 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02850 Bva-Chr13 20676887 20683213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02850 16 632 Protein tyrosine phosphatase (PTP) family AT3G09100 62.400 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02850 K13917 - gmx:100778292 1062.75