Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02845 ATGGCTGCACCGCCAAGTAGCAGGCTCCAAAGCATGTTGCAGGCTGCGGTGCAATCCGTTCAGTGGACTTATAGTCTCTTCTGGCAACTTTGTCCCCAACAAGGgaTTCTAATATGGGCTGATGGGTACTACAATGGGGCGATTAAGACGAGAAAGACAGTGCAACCAATGGAGGTTACTGCCGAGGAAGCGTCTCTCCAAAGAAGCCAGCAACTTAGGGAGCTTTATGACTCCTTGTCTGCCGGAGAGACAAACCCGCCGACGCGCCGCCCTTGCGCGGCCTTGTCACCGGAGGACCTAACTGAGTCTGAATGGTTCTACTTGATGTGTGTCTCGTTCTCCTTTCCTTCTGGTGTTGGGTTGCCGGGAAAGGCGTATGCAAGGAGGCAGCATGTATGGTTGGCTGGTGCGAACGAGGTGGAAAGCAAAGTGTTTTCAAGAGCCATTCTCGCCAAGAGTGCTCGTATACAGACCGTGGTATGCATTCCTCTATTGGACGGCGTCGTAGAACTCGGCTCAACAGATAAGaTTCAAGAAGACCTTGATTTTATCCAGCATATCAAGAGCTTCTTCGCAGACCACCAACATCAACAGCACAGCCCTCCGCCGCCAAAGCCCGCTCTGTCGGAGCATTCCACCTCCAATCCCACTTCCTCACCCAACCACTCCCGCTTCCACTCACCTCCCGTTCCGTCCACCATGTATCACGCCGTGGCGCACACATCACAGCCAGCAGCAAGTCCCACAGCAACTAATGGTAACCAAGACGACATGGACGAAGGTGAcgaagaggaggaagaagaagctgaCTCTGACTCCGAAGCAGAGATCGTCCGTAACAGGCGCCTGGCGACAACTGACATGGTAGCAGCCGCCGCAGAACCAAGCGAGCTAATGCAGCTAGAGATGTCGGAGGATATTCGGGTGGGGTCACCCGATGATGGGTCGAACAACCTGGACTCGGATTTCAATGTGTTAGCGGTGGGACAGAGTCAGAGTCAGTCATTGGATCATCAGCGGCGAGCTGACTCGTACAGGGCCGAGTCAACCCGGAGATGGCGGTCGGTGCAACTGCAAGACCCTGGGCCACTGCTTTCCTCGGAGCTTCAAGCACCACCTTCAGTGGGACCTCCGTTAGACGAGCTCACAAAGGAGGACACCCACTATTCTCAAACGGTTTCCACCATACTCCACAGCCAGTCAGCACGGTGGGCAGAATCACCCACCATGGGTTGCAACATCTACTCCTCCCAATCAGCTTTCGCCAAGTGGACCACCCATGCTGACCACGGTCTCCACCTGTCAGTCGATGCCACTTCCCAGTGGCTCCTCAAGTACATTTTATTCAGTGTCCCGTTCCTTCACACCAAGTACCGCGACGAGAACTCGCCTAGATCCGGCGACGCTGCTGCCCGGTTGAGGGGGAAGGGAACGCCGCAAGATGAGCTCAGCGCCAACCACGTGCTGGCCGAGCGCCGCCGGCGGGAGAAGCTCAACGAGAGATTCATCATTCTCAGGTCCCTGGTGCCCTTCGTCACCAAGATGGACAAGGCCTCCATATTAGGGGACACCATCGAGTACGTGAAACAGTTGCGGAAAAAGATTCAGGATCTCGAGGCACGTAACCGCCAGATGGAGACCGATCAACGTTCCAGATCGGTGGAGCTGCAACGGACGACTAGTTCAAAGGAACTACAAAGGAGCGGGGTGACAGTAATGGATCGGTCACGGGTCAGCGCAAACGGTAAGAAGTTGAGGATCTCGGAAGGGATGTCGAAATCGAAGACTACGGTGGACGCATCACCGCCATCTTCGCCTTTGGCTTCCGATGTGGTGACATCGGTGCAGGTGTCGATCATAGAGAGCGACGCGTTACTGGAGTTAGAGTGCCCGCACAGGGAAGGATTGTTACTAGACGTGATGCAAGTGCTGCGGGAGATGAGGATAGAGGTGACGGCGGTGCAGTCGTCGTTGAACAACGGGGTGTTTATGGCAGAGTTGAGGGCCAAGGTGAAGGAACACGTAACCGGAGGCAAGAAGGTGAGCATTGTGGAAGTGAAGAGGGCCCTAAATCAAGTGATACCCCATACTGACTG 2096 0.5439 MAAPPSSRLQSMLQAAVQSVQWTYSLFWQLCPQQGILIWADGYYNGAIKTRKTVQPMEVTAEEASLQRSQQLRELYDSLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARRQHVWLAGANEVESKVFSRAILAKSARIQTVVCIPLLDGVVELGSTDKIQEDLDFIQHIKSFFADHQHQQHSPPPPKPALSEHSTSNPTSSPNHSRFHSPPVPSTMYHAVAHTSQPAASPTATNGNQDDMDEGDEEEEEEADSDSEAEIVRNRRLATTDMVAAAAEPSELMQLEMSEDIRVGSPDDGSNNLDSDFNVLAVGQSQSQSLDHQRRADSYRAESTRRWRSVQLQDPGPLLSSELQAPPSVGPPLDELTKEDTHYSQTVSTILHSQSARWAESPTMGCNIYSSQSAFAKWTTHADHGLHLSVDATSQWLLKYILFSVPFLHTKYRDENSPRSGDAAARLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLEARNRQMETDQRSRSVELQRTTSSKELQRSGVTVMDRSRVSANGKKLRISEGMSKSKTTVDASPPSSPLASDVVTSVQVSIIESDALLELECPHREGLLLDVMQVLREMRIEVTAVQSSLNNGVFMAELRAKVKEHVTGGKKVSIVEVKRALNQVIPHTD 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02845 698 SMART finulus 488 537 IPR011598 GO:0046983
Bva13g02845 698 MobiDBLite consensus disorder prediction 460 482 - -
Bva13g02845 698 Pfam Helix-loop-helix DNA-binding domain 485 532 IPR011598 GO:0046983
Bva13g02845 698 MobiDBLite consensus disorder prediction 591 607 - -
Bva13g02845 698 MobiDBLite consensus disorder prediction 330 354 - -
Bva13g02845 698 MobiDBLite consensus disorder prediction 588 607 - -
Bva13g02845 698 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 482 531 IPR011598 GO:0046983
Bva13g02845 698 PANTHER TRANSCRIPTION FACTOR TT8 8 696 - -
Bva13g02845 698 Gene3D - 483 555 IPR036638 GO:0046983
Bva13g02845 698 MobiDBLite consensus disorder prediction 256 273 - -
Bva13g02845 698 MobiDBLite consensus disorder prediction 193 282 - -
Bva13g02845 698 PANTHER TRANSCRIPTION FACTOR TT8 8 696 - -
Bva13g02845 698 MobiDBLite consensus disorder prediction 210 228 - -
Bva13g02845 698 Coils Coil 521 548 - -
Bva13g02845 698 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Bva13g02845 698 MobiDBLite consensus disorder prediction 236 255 - -
Bva13g02845 698 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 484 550 IPR036638 GO:0046983
Bva13g02845 698 MobiDBLite consensus disorder prediction 554 575 - -
Bva13g02845 698 MobiDBLite consensus disorder prediction 542 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02845 Bva-Chr13 20649286 20654921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02845 382 696 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 40.379 6.26e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva13g02845 bHLH-MYC_N 4.9e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02845 - - pvy:116122009 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02903 04 24668228 24673252 Bva13g02845 13 20649286 20654921 BWGD
Bva13g02845 13 20649286 20654921 Bva13g02845 13 20649286 20654921 ECH