Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02832 ATGGATCAGAAGGAGTCTCGCATCACCGCTGCGAGACGAAGCTTGAAGCGGAAGCTCGAACAAGAATTCAACAAAGAACAAGGAGATCAAGTAGAATCTGATCGCAAGGTGCTAATTCTCGAACCTGAAGGACCTTACGAGGATCTTCTCAGCGATGTTGGAGCCCAGGTGGCGGTCCTCAACTCCACTTTCTCATCCTCCGAGTCAGATCGTGCAGCAGCCAAACGCGCCGTTCATGTCATTTCTGAACTCGCAAGAAATGAGGAGTCTGTGAATGATATAGTGAACTGTGGAGCCGTTCCCGCTCTGGTGAGACATCTACAAGCTCCCAAGCCAGTGGGGCAAGGTGATGGTGCTCCCCTGTCTTGCGAGCATGAGGTGGAGAAGGGATGTGCTTTGGCCCTTGGGCTCCTTGCCGTTAAACCAGAGCTTCAAGAACTCATTGTTGATGCTGGAGCTTTGGCCCATCTTGTAGATTTGTTAAAGAGGCACAAGACCAGTAGCAATTCTCGTCAACTTTCTGGTGTTATTAGGAGAGCAGCTGACGCAATAACCAACCTTGCACATGAAAATAGCATCACTAAAACCCGAGTCAGGATGGAAGGTGGAATCCCTCCTCTTGTTGAATTGCTTGAATTCCCAGACACAAAGGTACAGAGAGCGGCCGCAGGGGCGTTACGAACTCttgcttttaaaaatgatgaaaacaaaaaccagATTGTTGGATGCAACGCATTACCAACTCTTGTGCTAATGCTTCGATCAGAGGATGTTGCAATACATTATGAAGCGGTTGGTGTGATTGGAAACCTTGTCCACTCCTCGCCAAATATTAAGAAAGAAGTTCTTCTTGCTGGCGCTCTGCAACCCGTCATTGGCTTACTTAGTTCTTGCTGTTCGGAGAGTCAAAGAGAAGCAGCTCTTTTACTTGGTCAATTTGCTGCGACAGATTCGGATTGCAAGGTACACATTGCCCAAAGAGGTGCTCTCCAGCCTTTAATTGAAATGCTAAATTCTCCTGATGCACAGCTTCAGGAAATGTCAGCTTTTGCGCTTGGGAGGTTGGCACAGGACACACATAACCAAGCTGGTATTGCACATAATGGAGGCATCGAGCCGCTCCTCAATCTTCTTGGCTCGAAGAATGGATCTCTCCAACATAATGCCGCCTTTGCTCTATATGGTCTGGTTGATAACGAGGACAATGTTGCAGATATTATTAAAGTTGGCGGTGTTCAAAAACTGCAACATGGAGATTTCAAAGTTCAACCCACTAAAGAGTGTGTAGGAAAGACTTTGAAAAGATTGGAGGAGAAGATGCATGGGCGAGTGCTGAAACAACTGTTATATCTTATGTGGTTCTCAGAAAAAGCTCTTCAGAAACGGGTATCTCTGGCTCTTGCTCATTTATGTTCCCCGGATGATCGCAAGACTATTTTCATTGTCAACAATGGGCTAGAGTTGCTGCTGGATCTTCTGGAGTCTACGAGCCTCAAGCCGAGACGCGAGAGTTCAGTGGCACTATACAAGTTGGCTACTAAAGCCACATCTTTCTCTCCTGTTGATGCTGCTCCTCCATCACCAACTCCCCAGGTTTACTTAGGTGAGCAGTATGTAAACAATCCTACACTCTCTGATGTCACGTTCTTGGTAGAAGGCAAACGGTTTTATGCTCACAGAATTTGTTTGCTCGCGTCTTCTGATATATTCCGTGCAATGTTTGATGGCGGTTACAGGGAAAGGGAAGCCAAAGATATTGAAATTCCAAATATTAAATGGGATGTCTTTGAGTTGATGATGAGATTCATTTACACGGGGACAGTAGATGTCAATTTGGACATTGCTCAGGATCTCCTTAGAGCAGCTGATCAGTATCTTCTTGAGGGCCTTAAGCGTCTCTGTGAATATACTGTTGCTCAGGATATTTCTGCGGCAAATGTTCAACTAATGTATGAGCTATCAGAGGCCTTCAATGCTACGTCATTAAGGGAAGCATGTATACTCTTTATATTGGAGCAATTTGACAAACTGAGTCCCAAACCATGGTACAACCGCCTAATTCGTCGCATCATACCAGACATACGCAATTTTTTTACCAGTTTACTTACCAAGCCTAATCCAACTGACTCGTG 2132 0.4508 MDQKESRITAARRSLKRKLEQEFNKEQGDQVESDRKVLILEPEGPYEDLLSDVGAQVAVLNSTFSSSESDRAAAKRAVHVISELARNEESVNDIVNCGAVPALVRHLQAPKPVGQGDGAPLSCEHEVEKGCALALGLLAVKPELQELIVDAGALAHLVDLLKRHKTSSNSRQLSGVIRRAADAITNLAHENSITKTRVRMEGGIPPLVELLEFPDTKVQRAAAGALRTLAFKNDENKNQIVGCNALPTLVLMLRSEDVAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIAQRGALQPLIEMLNSPDAQLQEMSAFALGRLAQDTHNQAGIAHNGGIEPLLNLLGSKNGSLQHNAAFALYGLVDNEDNVADIIKVGGVQKLQHGDFKVQPTKECVGKTLKRLEEKMHGRVLKQLLYLMWFSEKALQKRVSLALAHLCSPDDRKTIFIVNNGLELLLDLLESTSLKPRRESSVALYKLATKATSFSPVDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDIFRAMFDGGYREREAKDIEIPNIKWDVFELMMRFIYTGTVDVNLDIAQDLLRAADQYLLEGLKRLCEYTVAQDISAANVQLMYELSEAFNATSLREACILFILEQFDKLSPKPWYNRLIRRIIPDIRNFFTSLLTKPNPTDS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02832 710 SMART arm_5 358 398 IPR000225 GO:0005515
Bva13g02832 710 SMART arm_5 141 189 IPR000225 GO:0005515
Bva13g02832 710 SMART arm_5 317 357 IPR000225 GO:0005515
Bva13g02832 710 SMART arm_5 472 513 IPR000225 GO:0005515
Bva13g02832 710 SMART arm_5 191 231 IPR000225 GO:0005515
Bva13g02832 710 SMART arm_5 275 315 IPR000225 GO:0005515
Bva13g02832 710 SMART arm_5 87 140 IPR000225 GO:0005515
Bva13g02832 710 SMART arm_5 233 273 IPR000225 GO:0005515
Bva13g02832 710 Gene3D - 169 281 IPR011989 -
Bva13g02832 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 202 237 IPR000225 GO:0005515
Bva13g02832 710 Pfam BTB/POZ domain 538 640 IPR000210 GO:0005515
Bva13g02832 710 Coils Coil 1 21 - -
Bva13g02832 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 411 IPR000225 GO:0005515
Bva13g02832 710 SUPERFAMILY ARM repeat 64 416 IPR016024 -
Bva13g02832 710 CDD BTB_POZ_ARIA_plant 532 647 - -
Bva13g02832 710 Gene3D - 43 168 IPR011989 -
Bva13g02832 710 Pfam Armadillo/beta-catenin-like repeat 233 272 IPR000225 GO:0005515
Bva13g02832 710 Pfam Armadillo/beta-catenin-like repeat 198 230 IPR000225 GO:0005515
Bva13g02832 710 Pfam Armadillo/beta-catenin-like repeat 317 356 IPR000225 GO:0005515
Bva13g02832 710 SUPERFAMILY POZ domain 536 637 IPR011333 -
Bva13g02832 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Bva13g02832 710 SUPERFAMILY ARM repeat 444 514 IPR016024 -
Bva13g02832 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 202 IPR000225 GO:0005515
Bva13g02832 710 Gene3D - 282 521 IPR011989 -
Bva13g02832 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 370 IPR000225 GO:0005515
Bva13g02832 710 ProSiteProfiles BTB domain profile. 545 612 IPR000210 GO:0005515
Bva13g02832 710 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 706 - -
Bva13g02832 710 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 706 IPR044282 -
Bva13g02832 710 Gene3D Potassium Channel Kv1.1; Chain A 526 671 IPR011333 -
Bva13g02832 710 SMART BTB_4 545 642 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02832 Bva-Chr13 20583040 20588717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02832 295 518 U-box Gene Family AT2G23140 26.293 3.33e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Bva13g02832 BTB 2.1e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02832 - - sind:105165291 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02832 13 20583040 20588717 Bva13g02832 13 20583040 20588717 ECH