Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02819 ATGAGAGACTTGTTCAGGTCTCGGAAGCGATTGGAGAAGACGGAGAAGGACACTGTTTCAGAAAGGGGAGAAGTTGAAATGAAAGAGGATGAACCAGGTCAAGAGGCTTCAAGTTTTAATGGTGAAGGTTTGGTGCATGAAAGAAAGGGATCGAACTTGATAATTGAGAAGGAGGAAACGGCGGGAGTAGTAAAAGAAGAATGTGTCTTAGATTTGGATACAGGTACAAGAACAAATATTGCGGTAGCTGAGAATAGGAACAAAAGGAGCAGGTTAAGTTTGGGGGATGCCATTGAAGAAGCTGATACTGAGAggacgaagaagaagaagcaaggtTTAAATGATAAAGTGCAGATAGGTGGTCGAGTGTTGCGGTCAATGTTAAAGAGAGGGGATGACAAGAAATCTGATAGTGGAGAGAACAATTTTGCGGTGGTTGGAAAAAGTAGAGAGCCTGATGTGTTTGAGAAGAAAACTATTGAGGAAGAAGCTGATGAATTTGCTAGTAATGCCTTTGAGAAGGAAGAGGTTGTTAATCTGAGAATTGATGACAATGATGAAAAGAAGTTGAAGCGGAAAAGAGGGAGACCACCCAAATTGGAGGCGAAAGGCCAAGGTCAATTAGCTAGTAAGTTGCATTGCAAGCGTGGAAGGCCCCCCAAAATGGAGATAAAAGAGCAAGATCAATCGGCTGGTGAGTTGCATCACAAACGTGGAAGGCCCCCTAAAATGGAGATAAAAGAGCAAGCTCAATTGCATCGCAAGCGTGGAAGGCCCCCCAAAATGGAGATAAAAGAGCAAGATCAATCTGTTGTTGAGTTTCATCGCAAGCGTGGAAGGCCCCCCAAAATAGAGATACTAGAGCAAGATCAATCTGTTGATAAGTCGCACTGCAAGCGTGGAAGGCCCCCTAAAATGGAGATAAAAGAGCAAGGTCAACCAGTTGGTGAGTTGCAGTGCATGAGTGGAAGGCTCACCAAGGCTAGGCCAAATCATTATCTCCTGAAAGTGGCttatagaaaaggaaaggtcGGTTTTGGAAGAGGTAAGAAACTCTTAAAAATGAGAGATAGTGTGAGGTTAAATGCAATTGATGATATATGCTCAAAAAGGAAATCTTGTGGCAAAGAATTaagaagcaagaaattttCTCCTGTCAAGAAGAGTACATTTGGAAAGACTTTGGaaacagagaaaaaggaaTCGCCATTGAGGTCAAATTCTGTGAAGGTGGATGCTGCTGGAAAGAGTTGGGAAAAGCAGTTAGtgagggaaaaaataaaggaactGCTCTTTGCTGCTGGATGGGAAGTTGACTATAGACCTCGGAATGGCAGAGAGTACAATGATGCTGTGTATGTTAGTCTAGATAAAAAGACTCACTGGTCTATTACATTGGCCTACAATAGGCTTAAAAGGCACTATGAAGCTGGTGATGGTGAAGATAAAGTATACAGGGAAGGTTTCAAATTTACACCAATACCACAGGAAGAATTCAATATTCTGACTAAAGtaatgaacaagaaaaagaaaagcaaacagAAACTGAAgcaaaaagggaaagaagaagaaaatacagtTGATGGAGTCCATAAAAagctgaaaaaagaaaaactaggTTCTGTTGTCAGCCTGGGTAAGTCaattaagggaaaaaagaaaaggagatgtTCCCTTCTTGAAGAGGATGATCCAGACATTACATCAGCTAGCGGGAAGCTGGTTCTAGTCAAGGATTACAAGCGAcagaaaacacaaaacaaGAAGAGATGTGCTCTGTTGGTTCGCAATGCTGAGAAGGAGGTAGATTCAGAAGATGATGGATATGTACCATATAATGGAAAACGAACTCTACTGTCTTGGATGATTGATTTGGGAACAGTGTTGCAGAATGAGAAGGTTCATTATATGAATCCCAAAACGAAATCTAAGGTGGAGGGTAGGATTATGGGAGATGGCATTCACTGTGACTGTTGTAAAGAAATCttaacaatttcaaaatttgaagctCATGCAGGAAGCGAACTCTGTGATCCacttgaaaatatttacaCGGAGGGAGGAACTTCCTTATTGCAGTGCCTGCTAGACTCATGGAATAAACAAGATGAATCCGAGCGTAAAGGTTTTCATTCCTTTGATATTGTGGGTGAAGACCCTAATGATGATACATGCGGTCTCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCAACATTCCATCAAAGCTGCTTGGATATCAATAAGTTCCCATCAGGTGACTGGCATTGCATTTATTGCTGTTGCAAATTTTGTGGGTTGGTTGGTCAAAGTACAAATCAAAGGGATGGCTGtgataatattattgaagGGGCACTACTTACGTGCTATTTATGCGaggaaaaatATCATTCGTCCTGTATTGAGACAAACTGTGCAAAGACTGACGATTCCAGTGATGCATCCTTCTGTGGAAACAGATGTAAAGAGTTATCTCAGAGACTTGGAATGCTTTTTGGGGTTGAACATGAAATTGAAGATGGTTTCTCTTGGACTTTTATTTGCCGGTCAGATGTTGGCTCTGATGCTTCTCAGATTAAACCTCAAATTGTTGAATGTAATTCCAAGCTAGCTGTTGCATTATTGATAATGGATGAGTGCTTCAAGCCTTATATTGATCATAGAAGTGGGATTAATCTGATCCACAGTATTCTTTATAATCGTGGTTCAAACTTTAGTCGCCTGAACTATAATGGATTTTTTACTGCGATTCTAGAGAGAGGTGACGAGATCATCTGTGCTGCATCTATCAGGATTCATGGGAACACACTAGCAGAGATGCCATTCATTGGGACTCGTTATATGTATAGGAGACAGGGAATGTGCCGCCGGCTTCTGAATGCCATTGAATCAGCACTTAGTTATCTCAATGTCGAGTTGCTGGTCATACCAGCGATCCCAGAAATGAGGAATACTTGGACTTCAGTTTTTGGGTTTGAGCCACTGGAAGTgcgaaacaaacaaaaaataaagatgaatcTGTTGGTATTCCCTCATGTAGACATGTTACAGAAGAAGATCACAAAGCATCAATTTGCCGATGAAAATTTGATTCCTACAGTTTCCAATTTTCAACTTAAGGAGAACTCAGGAGTGCATGAAGTAGCAAGTACGCGCAATGTGGCAGGGTCATCTGGATCTGAATTAATCATTTCTGATGGAGTCCTAGGCTCAAATGTATGCCAGATAAATGAAACCATGTCCAGTGAATATGGTTTTCTCCATGATCATGTCAGTGATCATGCTCGTTACCAAGCTGAACAGATGAATGCATTCCCGAATACTGATTCCGGTTGCATAGTCCCATCACATGATGAGAAAACAGTAGATTTGGATACCTCATTGAACAATTACGCTGACTCTAAGGAGGAAAGGCAATGCCTCTCATTGTCTCATTTTAGCACTGAAGGTAGCAAAAAAGGAGGACATTCTGGCAGTGTTTCCTTGCTGGGTACTGAATATATGCACAATACGGGGAAATTAGCTGATGAGATGGTCAAAAACAACAACGATCATGCTGAGGATCCTCCTCAACACTTGGTTGAAAGTATTCCTCCTGAATCTCGTGTTGTGTTATGCTCAGGGGATTCAAAACAATCTGCTGACATTATCAGCCATGATTCAGAGAATACAATTCTATCTACTGTCGGTGTAGGAACCGCGTCTGATGGCTGTCTGAAGTTGCAACTTACAGAAagtgtttgtgattttaataaaagaatttccGACAGTGGTGAACCGCAAAGCGGTCATGATTTCGTTCAGCCATGCTCCGTAGGATCAAAAGAGGTGCATTCTGAATCTGCCACTGGTTGTGATTCTCAGTGTAGACCCAGCGAAGCAGTCCTTCCAACTTGCGTCTCGATGCAcctaagaaaacaaaaccatCCTGATGATTGTAAAAAATCCTCCAATGTGGTCAATGAGCTAAACGCTGATGAAGCAGAAGTGTTTTCTGCCAAAACAACCAATCTCCAGACTTGCACAAGTAATGATGATTGTCAAACTGTACAGTTAGCTTCAGGTTCTTGTTCGGATATTGCAAACGGTGTCAATGATGATGGACCTTGGATGAACCAATCTTCAGGAGTAGCTCTTCACTGTGCATCTGCTGGTGGTAATTCGTACCGAGGCTATAGTTCGGTCAAATCAAGCta 4208 0.3893 MRDLFRSRKRLEKTEKDTVSERGEVEMKEDEPGQEASSFNGEGLVHERKGSNLIIEKEETAGVVKEECVLDLDTGTRTNIAVAENRNKRSRLSLGDAIEEADTERTKKKKQGLNDKVQIGGRVLRSMLKRGDDKKSDSGENNFAVVGKSREPDVFEKKTIEEEADEFASNAFEKEEVVNLRIDDNDEKKLKRKRGRPPKLEAKGQGQLASKLHCKRGRPPKMEIKEQDQSAGELHHKRGRPPKMEIKEQAQLHRKRGRPPKMEIKEQDQSVVEFHRKRGRPPKIEILEQDQSVDKSHCKRGRPPKMEIKEQGQPVGELQCMSGRLTKARPNHYLLKVAYRKGKVGFGRGKKLLKMRDSVRLNAIDDICSKRKSCGKELRSKKFSPVKKSTFGKTLETEKKESPLRSNSVKVDAAGKSWEKQLVREKIKELLFAAGWEVDYRPRNGREYNDAVYVSLDKKTHWSITLAYNRLKRHYEAGDGEDKVYREGFKFTPIPQEEFNILTKVMNKKKKSKQKLKQKGKEEENTVDGVHKKLKKEKLGSVVSLGKSIKGKKKRRCSLLEEDDPDITSASGKLVLVKDYKRQKTQNKKRCALLVRNAEKEVDSEDDGYVPYNGKRTLLSWMIDLGTVLQNEKVHYMNPKTKSKVEGRIMGDGIHCDCCKEILTISKFEAHAGSELCDPLENIYTEGGTSLLQCLLDSWNKQDESERKGFHSFDIVGEDPNDDTCGLCGDGGDLICCDGCPSTFHQSCLDINKFPSGDWHCIYCCCKFCGLVGQSTNQRDGCDNIIEGALLTCYLCEEKYHSSCIETNCAKTDDSSDASFCGNRCKELSQRLGMLFGVEHEIEDGFSWTFICRSDVGSDASQIKPQIVECNSKLAVALLIMDECFKPYIDHRSGINLIHSILYNRGSNFSRLNYNGFFTAILERGDEIICAASIRIHGNTLAEMPFIGTRYMYRRQGMCRRLLNAIESALSYLNVELLVIPAIPEMRNTWTSVFGFEPLEVRNKQKIKMNLLVFPHVDMLQKKITKHQFADENLIPTVSNFQLKENSGVHEVASTRNVAGSSGSELIISDGVLGSNVCQINETMSSEYGFLHDHVSDHARYQAEQMNAFPNTDSGCIVPSHDEKTVDLDTSLNNYADSKEERQCLSLSHFSTEGSKKGGHSGSVSLLGTEYMHNTGKLADEMVKNNNDHAEDPPQHLVESIPPESRVVLCSGDSKQSADIISHDSENTILSTVGVGTASDGCLKLQLTESVCDFNKRISDSGEPQSGHDFVQPCSVGSKEVHSESATGCDSQCRPSEAVLPTCVSMHLRKQNHPDDCKKSSNVVNELNADEAEVFSAKTTNLQTCTSNDDCQTVQLASGSCSDIANGVNDDGPWMNQSSGVALHCASAGGNSYRGYSSVKSS 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02819 1402 CDD PHD1_AIRE 725 764 - -
Bva13g02819 1402 ProSiteProfiles Zinc finger PHD-type profile. 722 767 IPR019787 -
Bva13g02819 1402 MobiDBLite consensus disorder prediction 1 35 - -
Bva13g02819 1402 SUPERFAMILY FYVE/PHD zinc finger 710 766 IPR011011 -
Bva13g02819 1402 MobiDBLite consensus disorder prediction 216 246 - -
Bva13g02819 1402 Pfam Tify domain binding domain 647 696 IPR032308 -
Bva13g02819 1402 PRINTS AT-hook-like domain signature 251 262 IPR017956 GO:0003677
Bva13g02819 1402 PRINTS AT-hook-like domain signature 273 283 IPR017956 GO:0003677
Bva13g02819 1402 PRINTS AT-hook-like domain signature 191 201 IPR017956 GO:0003677
Bva13g02819 1402 SMART AT_hook_2 253 265 IPR017956 GO:0003677
Bva13g02819 1402 SMART AT_hook_2 235 247 IPR017956 GO:0003677
Bva13g02819 1402 SMART AT_hook_2 299 309 IPR017956 GO:0003677
Bva13g02819 1402 SMART AT_hook_2 191 203 IPR017956 GO:0003677
Bva13g02819 1402 SMART AT_hook_2 275 287 IPR017956 GO:0003677
Bva13g02819 1402 SMART AT_hook_2 215 225 IPR017956 GO:0003677
Bva13g02819 1402 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 865 1024 IPR000182 GO:0016407
Bva13g02819 1402 Pfam AT hook motif 191 199 IPR017956 GO:0003677
Bva13g02819 1402 Pfam AT hook motif 254 262 IPR017956 GO:0003677
Bva13g02819 1402 Pfam AT hook motif 276 283 IPR017956 GO:0003677
Bva13g02819 1402 Pfam AT hook motif 299 306 IPR017956 GO:0003677
Bva13g02819 1402 Pfam AT hook motif 215 222 IPR017956 GO:0003677
Bva13g02819 1402 Pfam AT hook motif 237 244 IPR017956 GO:0003677
Bva13g02819 1402 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 12 1324 - -
Bva13g02819 1402 MobiDBLite consensus disorder prediction 1 50 - -
Bva13g02819 1402 MobiDBLite consensus disorder prediction 291 315 - -
Bva13g02819 1402 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 912 1000 IPR016181 -
Bva13g02819 1402 Coils Coil 506 526 - -
Bva13g02819 1402 MobiDBLite consensus disorder prediction 291 307 - -
Bva13g02819 1402 SMART PHD_3 766 826 IPR001965 -
Bva13g02819 1402 SMART PHD_3 724 765 IPR001965 -
Bva13g02819 1402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 715 785 IPR013083 -
Bva13g02819 1402 MobiDBLite consensus disorder prediction 182 246 - -
Bva13g02819 1402 PANTHER PHD FINGER PROTEIN 12 12 1324 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02819 Bva-Chr13 20503014 20512558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02819 107 1031 PHD Transcription Factor Family AT5G36670 38.095 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02819 - - lang:109346644 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02875 04 24539825 24548689 Bva13g02819 13 20503014 20512558 BWGD
Bva13g02819 13 20503014 20512558 Bva13g02819 13 20503014 20512558 ECH