LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva13g02748	ATGGCGAATCAGGTAGCAAAAGTAAAGAGGGATACGATTGTAGCATGCATGACTTGCCCACTTTGCAACAAGTTGTTCACAGATGCCACAACTATATCTGAATGTCTTCATACGTTTTGCAGGAAGTGCATATCTGATAAAATTACAGATGAGGAGTTAGAATGCTGTCCAATATGCAATATTGATTTGGGTTGTGTCCCACTTGAGAAATTGAGGCCAGACCACAGTATGCAAGATTTGAGGGCTAAGATTTTCccatcaaagaaaacaaaggaaaaggcACCAGAAGTTGCCCCCTCAGTAACATTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTAGTTAGCACTCCCAGAGTATCGGCGCAGGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTGGCCTGCGGGCCTCTACTTTTTCCATTGAGAAAACCAttaaaaaagaggaagaatcAGTAGAAGATCATCCAGAGAGCTCAAGTTCGCCTGACATTTTGAATAAGTTTACTCAGAATAATGGACAGAGTTTGTCACCTGGTGAGGGTAGCCAATCTATACCCAATAAAGAAACAGATGATACTGCTGCACATTCTGAAGCAAAATTGGATCTGTGGAAACCATTGAATTGTTTAGTAGAGGCTGCTACTAGTAGGAGTAAATCTTTCAAATCTAATATGCAAGCCTCTGATGGTAAACTAGAACAAACGCAAGTTAATGGTAGTGACTCTCAAGTgaataaatccaaaaataaggaaaatagGCGCAAGGTAAAAGTTGAGGACGAAAAGACTCACACTGATCCTGTGCCATCAGATACAGTAAAACCCAACAAATTGCGCAGAGTTCGCCGGAAAAAGGAATCTGTTTCTGGAGAAGTGGGCATATCACCCCAAGCTGTGCTGGATGCTACTAGTGCCAAAGACAAAAAAAGGACTGGTCCAATATGGTTCACCTTGGTAGCTTCTGAAGACCAGGAAGGAGATGCTCCATTACCCCAAATTCCTTCGAATTATTTGAGAATAAAGGATGGAAGTGTACCTGTCTCATTTGTTCAAAAATACCTAATGAAGAAATTAGATTTGGCCAGTGAAGACGAGGTTGAGATTAGATGTATGGGACAAACAGTGGTTAATACACTGCAACTGTATGATTTGGTTGACTTGTGGCTGCAATCAGCATCCACACCACAACGTATTTCAGCAACTGTTGGGTCCTCTGGAAAGGATTTTGTAATGGTGTTGGTCTATGCTCGGAAGGTCCCAAATCCTTG	1292	0.3994	MANQVAKVKRDTIVACMTCPLCNKLFTDATTISECLHTFCRKCISDKITDEELECCPICNIDLGCVPLEKLRPDHSMQDLRAKIFPSKKTKEKAPEVAPSVTLPARRKERSLSSLVVSTPRVSAQATMTGRRTKPTRKASGLRASTFSIEKTIKKEEESVEDHPESSSSPDILNKFTQNNGQSLSPGEGSQSIPNKETDDTAAHSEAKLDLWKPLNCLVEAATSRSKSFKSNMQASDGKLEQTQVNGSDSQVNKSKNKENRRKVKVEDEKTHTDPVPSDTVKPNKLRRVRRKKESVSGEVGISPQAVLDATSAKDKKRTGPIWFTLVASEDQEGDAPLPQIPSNYLRIKDGSVPVSFVQKYLMKKLDLASEDEVEIRCMGQTVVNTLQLYDLVDLWLQSASTPQRISATVGSSGKDFVMVLVYARKVPNP	430

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva13g02748	430	MobiDBLite	consensus disorder prediction	166	198	-	-
	Bva13g02748	430	MobiDBLite	consensus disorder prediction	225	253	-	-
	Bva13g02748	430	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	3	103	IPR013083	-
	Bva13g02748	430	PANTHER	E3 UBIQUITIN PROTEIN LIGASE DRIP1	3	426	-	-
	Bva13g02748	430	ProSiteProfiles	Zinc finger RING-type profile.	19	60	IPR001841	-
	Bva13g02748	430	ProSitePatterns	Zinc finger RING-type signature.	35	44	IPR017907	-
	Bva13g02748	430	SMART	ring_2	19	59	IPR001841	-
	Bva13g02748	430	PANTHER	E3 UBIQUITIN PROTEIN LIGASE DRIP1	3	426	IPR044807	GO:0004842
	Bva13g02748	430	SUPERFAMILY	RING/U-box	13	85	-	-
	Bva13g02748	430	MobiDBLite	consensus disorder prediction	254	284	-	-
	Bva13g02748	430	MobiDBLite	consensus disorder prediction	108	207	-	-
	Bva13g02748	430	MobiDBLite	consensus disorder prediction	225	296	-	-
	Bva13g02748	430	MobiDBLite	consensus disorder prediction	112	147	-	-
	Bva13g02748	430	MobiDBLite	consensus disorder prediction	149	165	-	-
	Bva13g02748	430	Pfam	Zinc finger, C3HC4 type (RING finger)	19	59	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva13g02748	Bva-Chr13	20134139	20140684	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva13g02748	2	349	C3H Transcription Factor Family	AT2G30580	54.416	1.85e-114	337

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva04g02825	04	24247344	24253110	Bva13g02748	13	20134139	20140684	BWGD
	Bva13g02748	13	20134139	20140684	Bva13g03447	13	23530117	23535478	ECH
	Bva13g02748	13	20134139	20140684	Bva04g03386	04	27006425	27008418	ECH
	Bva13g02748	13	20134139	20140684	Bva13g02748	13	20134139	20140684	ECH
	Bva04g02825	04	24247344	24253110	Bva13g02748	13	20134139	20140684	ECH
	Bva05g02141	05	16206290	16210018	Bva13g02748	13	20134139	20140684	ECH