Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02741 ATGACGACGGAAGAGCTCACTGTGGCCGCGGAGGCCGCATCAGAACCTGCAAATGCCGACCCAGTTGAGGAAAAACAAGCTACCACGAAGGCTGGTAGGACCAAGAAAGCTAGGGAGCCCAAACCTAAAAAAGCAGCTGCTCCCAGATCTCGCAACCCTCCTTCACACCCTCCTTACGAGGAGATGATCAAGGATGCGATTACCACGCTGAAGGAGAAGTCAGGTTCCAGCCAGTACGCGATTGCAAAGTTCATTGAAGAGAAGCATAAGCAGCTTCCTCCCAACTTCAGGAAGCTCTTGTTGTTCCATTTGAAGAAGCTCGTTGCTTCTGACAAGCTTGTGAAGGTAAAGGGTTCCTTCAAGCTTCCTTCTGCTAAGTCATCGGCTCCAAAGGCAGCTCCGGCCCCTGCACCGGCGAAGAAGAAGCCTGCAGCTGCTAAGCCAAAGCCCAAGCCAGCTTCTAAGCCTAAGGAAACGAAGAAGGCACCTGCTAAAGCGCCTGCTAAGGCTAAGGCAGCTGCTAAACCAAAGCCTAAGCCGGCTGCCAAGCCTAAGGCTGCTGCCAAGCCTAAAGCTGCTCCAGCTAAGGCCAAGTCTTCTGCAAAGCCTAAAGCTTCTGCTAAGCCTAAGGCAGCTACAAAGCCGAAGCCCAAGGAGAGGCCCGCAAAAGCTTCAAGGACATCAACGAGAACATCTCCGGGGAAGAGAGCCGCCGCTCCTAAACCGGCACCCAAGAAGGCTGCAGCTGCCAAAAAAGCCCCTGCTAAAAGTGTTAAGCCGAAGAGCGTAAAGTCTCCGGCAAAGAAGGCTACAGCGAAGAGAGGAAGGAAGTG 833 0.5342 MTTEELTVAAEAASEPANADPVEEKQATTKAGRTKKAREPKPKKAAAPRSRNPPSHPPYEEMIKDAITTLKEKSGSSQYAIAKFIEEKHKQLPPNFRKLLLFHLKKLVASDKLVKVKGSFKLPSAKSSAPKAAPAPAPAKKKPAAAKPKPKPASKPKETKKAPAKAPAKAKAAAKPKPKPAAKPKAAAKPKAAPAKAKSSAKPKASAKPKAATKPKPKERPAKASRTSTRTSPGKRAAAPKPAPKKAAAAKKAPAKSVKPKSVKSPAKKATAKRGRK 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02741 277 MobiDBLite consensus disorder prediction 119 277 - -
Bva13g02741 277 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva13g02741 277 Gene3D - 50 134 IPR036388 -
Bva13g02741 277 MobiDBLite consensus disorder prediction 1 62 - -
Bva13g02741 277 CDD H15 53 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva13g02741 277 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva13g02741 277 PANTHER HISTONE H1.1 3 277 - -
Bva13g02741 277 MobiDBLite consensus disorder prediction 26 46 - -
Bva13g02741 277 PANTHER HISTONE H1 3 277 - -
Bva13g02741 277 MobiDBLite consensus disorder prediction 151 165 - -
Bva13g02741 277 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva13g02741 277 PRINTS Histone H5 signature 145 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva13g02741 277 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva13g02741 277 PRINTS Histone H5 signature 201 220 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva13g02741 277 PRINTS Histone H5 signature 179 196 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva13g02741 277 MobiDBLite consensus disorder prediction 262 277 - -
Bva13g02741 277 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva13g02741 277 SUPERFAMILY "Winged helix" DNA-binding domain 52 134 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02741 Bva-Chr13 20105977 20107283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02741 50 124 Single Myb Histone (SMH) Gene Family AT1G72740 36.000 1.13e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02741 K11275 - cit:102626409 142.124