Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02709 atgaattcctctctctttctaagGCCAGATTGGGATATCTGGCACGAGTTCTGCTGTTCAGATTTTGGGTTGGAATTGGAATCTTGTTCAACCACAGCCACAGCAGCTGCTTATTCTGATGCCCTTTCCTTCGATATGGTGGACCTGCACTTCTCCACGGATCTACAACCAAATCAGGCAGTGAAAGTGGAAGAAACAACAACCTCGGAGTTGGACAAAAATAGCAATAAGTCAAAGCAAATATTAGAGAGCTCTCACTCTGAATTTACAGCAGCAGTAGTCAACAGCAAGGACAGATCGTACGTTGGTGTGAGGAAAAGGCCTTGGGGGAAATTTGCAGCAGAGATCAGAGATACAACAAGGCACGGTGCCAGGGTTTGGCTTGGAACCTTCGACACTGCAGAGGCAGCTGCTTTGGCTTATGACCAAGCTGCTTATTCCATGAGGGGCCCAACTGCTACCCTTAATTTTCCAGTGGAAATGGTTCGACAATCTTTGCAGGATTTCAAGTATGCCTGCAGTGAAGGCTCTTCGCCTGCATTAGCTCTCAAGCAAAAACACTGCATTCAACGAAAATTAGCAGCAAAGGCTcgcaaaaacaaaagcaaggcAACAAGCAGTGTGGTGGTGCTAGAGGACTTGGGAGTTGACTATCTTGAGCAGCTACTTGCTGTATCTGATCAAAACGTAAGCCCTAGCaaccatttcaaaaaata 716 0.4302 MNSSLFLRPDWDIWHEFCCSDFGLELESCSTTATAAAYSDALSFDMVDLHFSTDLQPNQAVKVEETTTSELDKNSNKSKQILESSHSEFTAAVVNSKDRSYVGVRKRPWGKFAAEIRDTTRHGARVWLGTFDTAEAAALAYDQAAYSMRGPTATLNFPVEMVRQSLQDFKYACSEGSSPALALKQKHCIQRKLAAKARKNKSKATSSVVVLEDLGVDYLEQLLAVSDQNVSPSNHFKK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02709 238 PANTHER DNA-BINDING DOMAIN 66 225 IPR044808 GO:0003700|GO:0009873
Bva13g02709 238 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Bva13g02709 238 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Bva13g02709 238 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Bva13g02709 238 SUPERFAMILY DNA-binding domain 101 160 IPR016177 GO:0003677
Bva13g02709 238 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Bva13g02709 238 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
Bva13g02709 238 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Bva13g02709 238 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Bva13g02709 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 66 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02709 Bva-Chr13 19947681 19948397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02709 98 227 AP2-EREBP Transcription Factor Family AT3G23240 57.037 1.39e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva13g02709 AP2 6.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02709 K14516 - gmx:100812017 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02709 13 19947681 19948397 Bva04g02790 04 24069141 24069944 BWGD