Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02708 ATGGATTCCTCTTTCTATCTACAGCCAGATTGGGACATATGGCAAGAGTTCTGCTGCTCAGATTTTCTGTTAGATTCTTGTTATTCAACCACAACCACAAGCACTCCTACTTACTGGGATTCCCTTTCCTTTGATATGGTGGATCAGCTTCACGTCTCCGCAGATCCACAACCACAACCTCATCAGGCAGTGGAAGTGGAAGAAACGCCGACAACCTTGGAGTTAGAGCAAGATCATAACAATAGGGCAAACCAAATAGAGAGCTCTCACTCTGAATTTGCTGCACTAGTCAACAGATCATCGTCGTACATTGGTGTGAGGAAAAGGCCTTGGGGGAGATTTGCAGCAGAGATCAGAGATTCAACACGGAGTGGTGCCAGGGTTTGGCTTGGAACCTTTGACACTGCGGAGGCAGCTGCTTTGGCTTATGACCAAGCTGCTTATTCCATGAGGGGCTCTACTGCTATTCTTAATTTTCCGGTGGAAAAGGTTCGACAATCTTTGCAGGATATCGAGTATGCCTGCAGCAAAGGCTCTTCTCCTGCATTAGCTCTCAAGCACAAATACTGCACCCAACGAAAAGTGGCAGCAAAGActcacaaaaacaaaagcaaggcAACAAGCAGTGTGGTGGTGCTAGAGGACTTGGGAGTTGACTATCTTGAGCAGCTTCTTGCCTTGTCTGAATATCAAAGTGCAAGCCCTAGCATCCAATTCGAATA 722 0.4529 MDSSFYLQPDWDIWQEFCCSDFLLDSCYSTTTTSTPTYWDSLSFDMVDQLHVSADPQPQPHQAVEVEETPTTLELEQDHNNRANQIESSHSEFAALVNRSSSYIGVRKRPWGRFAAEIRDSTRSGARVWLGTFDTAEAAALAYDQAAYSMRGSTAILNFPVEKVRQSLQDIEYACSKGSSPALALKHKYCTQRKVAAKTHKNKSKATSSVVVLEDLGVDYLEQLLALSEYQSASPSIQFE 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02708 240 CDD AP2 101 161 IPR001471 GO:0003700|GO:0006355
Bva13g02708 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 75 228 - -
Bva13g02708 240 SUPERFAMILY DNA-binding domain 101 162 IPR016177 GO:0003677
Bva13g02708 240 Gene3D AP2/ERF domain 102 162 IPR036955 GO:0003700|GO:0006355
Bva13g02708 240 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Bva13g02708 240 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Bva13g02708 240 PANTHER DNA-BINDING DOMAIN 75 228 IPR044808 GO:0003700|GO:0009873
Bva13g02708 240 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Bva13g02708 240 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
Bva13g02708 240 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02708 Bva-Chr13 19938134 19938856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02708 102 229 AP2-EREBP Transcription Factor Family AT3G23240 59.398 1.91e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva13g02708 AP2 3.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02708 K14516 - gmx:100782036 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02708 13 19938134 19938856 Bva13g02708 13 19938134 19938856 ECH