Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02707 atggATTCCTCTTTCTATCTACACCCAGATTGGGACATATGGCAAGAGTTCTGCTGCTCAGATTTTCTGTTAGATTCTTGTTATTCAAGCTCAATCACAACCACAAGCACTGCTACTTACTGTGATTCCCTTTCCTTTGATATGGTGGATCAGCTGCACTTCTCCACAGATCCACAACCACAGCCTCATCAGGCAGCGGAAGTGGAAGAAACGCCGACAACCTTGGAGTTAGAGCAAGATCATAACAATAGGGCAAACCAAATAGAGAGCTCTCACTCTGAATTTGCTGCACTAGTCAACAGATCATCGTCGTACATTGGTGTGAGGAAAAGGCCTTGGGGGAGATTTGCAGCAGAGATCAGAGATTCAACACGGCGTGGTGCCAGGGTTTGGCTTGGAACCTTTGACACTGCGGAGGCAGCTGCTTTGGCTTATGACCAAGCTGCTTATTCCATGAGGGGCTCCACTGCTATTCTTAATTTTCCGGTGGAAAAGGTTCGACAATCTTTGCAGGATATCGAGTATGCCTGCAGCAAAGGCTCTTCTCCTGCATTAGCTCTCAAGCACAAATACTGCACCCAACGAAAAGTGGCAGTAAAGActcacaaaaacaaaagcaaggcAACAAGCAGCGTGGTGGTGCTAGAGGACTTGGGAGTTGACTATCTTGAGCAGCTTCTTGCCGTGTCTGAATATCAAAGTGCAAGCCCTAGCACCCATTTCGAATA 728 0.4547 MDSSFYLHPDWDIWQEFCCSDFLLDSCYSSSITTTSTATYCDSLSFDMVDQLHFSTDPQPQPHQAAEVEETPTTLELEQDHNNRANQIESSHSEFAALVNRSSSYIGVRKRPWGRFAAEIRDSTRRGARVWLGTFDTAEAAALAYDQAAYSMRGSTAILNFPVEKVRQSLQDIEYACSKGSSPALALKHKYCTQRKVAVKTHKNKSKATSSVVVLEDLGVDYLEQLLAVSEYQSASPSTHFE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02707 242 CDD AP2 103 163 IPR001471 GO:0003700|GO:0006355
Bva13g02707 242 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Bva13g02707 242 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Bva13g02707 242 SMART rav1_2 104 168 IPR001471 GO:0003700|GO:0006355
Bva13g02707 242 SUPERFAMILY DNA-binding domain 103 164 IPR016177 GO:0003677
Bva13g02707 242 Pfam AP2 domain 104 154 IPR001471 GO:0003700|GO:0006355
Bva13g02707 242 PANTHER DNA-BINDING DOMAIN 72 230 IPR044808 GO:0003700|GO:0009873
Bva13g02707 242 ProSiteProfiles AP2/ERF domain profile. 104 162 IPR001471 GO:0003700|GO:0006355
Bva13g02707 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 72 230 - -
Bva13g02707 242 Gene3D AP2/ERF domain 104 164 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02707 Bva-Chr13 19930026 19930754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02707 104 231 AP2-EREBP Transcription Factor Family AT3G23240 59.398 2.82e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva13g02707 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02707 K14516 - gmx:100782036 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02707 13 19930026 19930754 Bva04g03425 04 27224034 27225499 ECH
Bva13g02707 13 19930026 19930754 Bva13g02707 13 19930026 19930754 ECH