Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02691 ATGCCGTCTCTATTATCTCCCGGGAAAATCCATCGCTTAGAAATGGAGAACTTCAAGTCCTACAAGGGTTTTCAAGTAATCGGTCCTTTCTATGATTTCACGGCAATTATTGGCCCCAATGGCGCTGGCAAGTCGAACCTCATGGATGCCATTAGCTTTGTACTTGGTGTAAGGACAGGCCAACTTCGCGGGGCTCAATTGAAGGACTTAATCTACGCTTACGACGACAAAGAAAAGGAGCAGAAGGGAAGAAGGGCCTTCGTGCGGTTGGTTTATCAGTTGGGTAACGGGTCGGAGATCCAATTTACCAGGACCATTACTAGCTCGGGTGGGAGCGAGTACCGGATAGATGGCAACATTGTAACGTGGGatgtatataataatagacTCAAGTCGCTTGGGATTCTTGTCAAGGCTCGCAATTTCTTGGTGTTTCAGGGTGATGTGGAATCCATCGCATCCAAAAATCCAAAGGAGCTTACTGCTCTTCTTGAGCAGATATCTGGCTCCGATGAGCTTAAGAGAGACTATGAgcaatttgaagaagaaaagaccaGAGCTGAAGAAGCTTCAGCCCTTGTCtatcagaagaagaagacagtAGTTATggagagaaagcaaaagaaagaacaaaaggagGAAGCAGAGAAACACCTCCGCTTGCAAGATCAGCTGaaaTCTTTAAAGAAAGAGCATTTCTTGTGGCAgttattcaatataaaaaaagatactGCAAAGATGAAGGACGATTTTGcggatgaaaaaagaaatcgtGAAGTTGTCATGGAAGaactagaaaattttgaagctgAAGCAGgtaaaaagaggaaagaacAGGCCAAATATCTGAAAGAGATTGGGATCCTGGAGAAGAGAATTGCTGAGTTAAGCAACAAACTTGACAAGAACCAACCTGAACTTCTGAAGTGGAAGGAGGAAATGTCTcgaataaattcaaaaatcaaaaaagggaagaaggaGCTTGATAGGAAAAGAACAGAAAGGAGGAAACATGGTGATGAGATAGCAGAGCTACAGAGGGGCATAAGGGATTTGGCTGCAAAACTGGAAGATCTACAAGCAAAGGGCAGACATGTTGGTGAGGAACTAAAGTTAGATGGTGCTGaattggaaaaatattttcgaATCAAAGAGGAAGCTGGGATGAAAACTGCTAAGCTTAGAGATGAGAAAGAGGTTCGGGATAGGCAACAGCAGGCTGATATTGAAgctcaaaaaaatttggaagaaaatcTTCAACAGTTAAGGAATAGGGAGTCTGAACTGAATTCCCAGGAAGCTCAGATGCGAACAAGGCTGAAAAAAATCCTTGATAATTATGGAAAGCAAAAGGATGACCTTGCaaacttgaaaaaagaatTGCGTGTGATGCAGGACAAACATCGAGATTCCAAaatcaaatatgaaaatctGAAGCTGAAAATTGgtgaaatagaaaatcaattgCATGAGCTGAGGGCTGATAGATATGAAAATGAGAGAGATGCTAAATTGTCTCAGGCTGTGGAGACTCTCAAACGCCTGTTTCAAGGAGTCCATGGTCGCATGACTGACCTTTGTAGGCCAACACAGAAGAAATATAATCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTTGTAGTTGAGGATGAAAATACTGGAAAGGAATGCATCAAGTATTTGAAAGACCAAAGGCTTCCTCCTCAGACATTTATTCCTCTGCAATCAATTCGTGTGAAGCCAATATTTGAAAGATTGCGCACATTGGGTGGTACTGCAAAGCTTGTTTTTGATGTCATTCAATATCCTTTTCCACTAATGGCCGAATTGTCTGTTCtgctcataatttttttgaaaagagcTTTGGTTTTAGTTGTTTGTAATACATGCAAGTTTGATCCTGCCTTGGAGAAGGCAATCCTCTTTGCCGTTGGGAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAGTTTTGAGCTGGACTGGTGAGAGGTTCAAAGTCGTGACTGTGGATGGAATTCTGCTGACAAAGTCTGGCACAATGACTGGTGGCACCAGTGGTGGAATGGAGGCCAGGTCAAAGCAGTGGGATGACAAAAAGATTGAAGgtcttaaaaaaaagaaagaacagcTTGAATCAGAGTTGGAAGAGCTGGGATCAATAAGAGAAATGCATCTTAAGGAGTCTGAAGCTTCTGGAAAGATTAGTGGGCTTGATAAGAAGATTCACTATGCTGATATTGAAAAGAAAAGCATCGAGGACAAACTTATGAATTTAAAGGCAGACAAGGAGAAAATCAAAGGAGAAATTGCTCGTTTGAGTCCAGAACTTCAGAAGTTAAACGATGCTGTTAATAAGAGGAGCAATGAAGTAGGTGAACTGGAGAaggaaatcaataaaattactgATAAGATTTACAAAAACTTTAGCAAGTCAGTTGGGGTAGCAAACATCCGCGAGTATGAAGAAAACCAACTCAAAGCTGCTCAAAATGTGGCAGACGAGAGGTTAAACTTGAACAGCCAgctatcaaaattaaaatatcagtTGGAGTATGAGCAAAATCGGGATGTCAGCTCACGAATAGAAGAACTGCAAACTTCTTTAGGTAATTTAGAACGTGATTTAAAACGGGTACAGAACAAAGAGGCCGAAGTGAAGTTAGGAGCTGGGAAAGCTACTGAAGAGATTGCTAAGTTGAAAGAAGATGTTCATgAGTTGAAATCAAAATCAGAAGATTGTGAGAAGGATATCCAAGAGTGGAAGAAACGGGCTTCTTCAGCCACAACAAGCATATCCAAACTTACTCGTCAGATGAACTCCAAGGAGGCACAAATTCAGCAGTTAATTGCGCGGAAGCAGGAAATAGCAGAGACGTGTGAACTAGAACAAATTAGTCTTCCAACCATCTCTGATCCGATGGAAACTGAATCCTCAACACCAGGTCCAGTTTATGACTTTGATCAACTAAGTAGGACACTGAAGGATCGGAGGCAGTCTGACAGGGATAAAATTGAGGTTGAATTCAAGCAAAAAATGGATGCCTTAACATCTGATATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAAGTTCTactagaaaaggaaagagcTGTTGTTGAAGAGTTTGAAGCTGTTAGAAAAGGGGAGAAGGAAAAAGCTGATCGGTTCAATTCAGTTAAACAAAAGAgGTATGAGTTGTTCATGGATGCTTTCAACCATATATCTGgtattatagataaaatttacaagCAACTTACAAAGAGCCCCACACATCCACTGGGTGGAACAGCATATTTGAATctagaaaatgaagatgatcCATTTCTACATGGTATTAAATATACTGCTATGCCTCCAACAAAGCGCTTTCGCGATATGGACCAACTGTCTGGTGGGGAGAAGACTGTTGCAGCACTTGCATTGCTATTCTCCATCCACAGTTATAAGCCTTcaccattttttatattggaCGAAGTAGATGCTGCATTGGATAACTTAAATGTCGCCAAGGTTGCCGGTTTCATCCGTTCAAAATCCTGTGAGGGAGCAAGGGCTAGCCAGGATGCTGACGGTGCCAATGGTTTCCAAAGTATTGTGATATCGCTGAAAGATAGCTTCTACGACAAAGCCGAAGCATTGGTTGGAGTTTACAGGGATTCACAGAGAAGCTGTTCGAGAACTCTGACATTTGACCTGACCAAGTACCGGGAGTCATCGAGTTCAAATCCTAATGCATG 3764 0.3754 MPSLLSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAYDDKEKEQKGRRAFVRLVYQLGNGSEIQFTRTITSSGGSEYRIDGNIVTWDVYNNRLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYEQFEEEKTRAEEASALVYQKKKTVVMERKQKKEQKEEAEKHLRLQDQLKSLKKEHFLWQLFNIKKDTAKMKDDFADEKRNREVVMEELENFEAEAGKKRKEQAKYLKEIGILEKRIAELSNKLDKNQPELLKWKEEMSRINSKIKKGKKELDRKRTERRKHGDEIAELQRGIRDLAAKLEDLQAKGRHVGEELKLDGAELEKYFRIKEEAGMKTAKLRDEKEVRDRQQQADIEAQKNLEENLQQLRNRESELNSQEAQMRTRLKKILDNYGKQKDDLANLKKELRVMQDKHRDSKIKYENLKLKIGEIENQLHELRADRYENERDAKLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIKYLKDQRLPPQTFIPLQSIRVKPIFERLRTLGGTAKLVFDVIQYPFPLMAELSVLLIIFLKRALVLVVCNTCKFDPALEKAILFAVGNTLVCDDLEEAKVLSWTGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLKKKKEQLESELEELGSIREMHLKESEASGKISGLDKKIHYADIEKKSIEDKLMNLKADKEKIKGEIARLSPELQKLNDAVNKRSNEVGELEKEINKITDKIYKNFSKSVGVANIREYEENQLKAAQNVADERLNLNSQLSKLKYQLEYEQNRDVSSRIEELQTSLGNLERDLKRVQNKEAEVKLGAGKATEEIAKLKEDVHELKSKSEDCEKDIQEWKKRASSATTSISKLTRQMNSKEAQIQQLIARKQEIAETCELEQISLPTISDPMETESSTPGPVYDFDQLSRTLKDRRQSDRDKIEVEFKQKMDALTSDIERTAPNLKALDQYEVLLEKERAVVEEFEAVRKGEKEKADRFNSVKQKRYELFMDAFNHISGIIDKIYKQLTKSPTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMDQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARASQDADGANGFQSIVISLKDSFYDKAEALVGVYRDSQRSCSRTLTFDLTKYRESSSSNPNA 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02691 1254 Coils Coil 753 773 - -
Bva13g02691 1254 Coils Coil 251 299 - -
Bva13g02691 1254 Coils Coil 170 190 - -
Bva13g02691 1254 Gene3D - 8 230 IPR027417 -
Bva13g02691 1254 Coils Coil 698 732 - -
Bva13g02691 1254 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1246 - -
Bva13g02691 1254 Coils Coil 894 963 - -
Bva13g02691 1254 Pfam SMC proteins Flexible Hinge Domain 517 661 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Bva13g02691 1254 Coils Coil 314 334 - -
Bva13g02691 1254 Pfam RecF/RecN/SMC N terminal domain 10 1230 IPR003395 -
Bva13g02691 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 1228 IPR027417 -
Bva13g02691 1254 Gene3D - 824 981 - -
Bva13g02691 1254 Gene3D - 1068 1252 IPR027417 -
Bva13g02691 1254 Gene3D - 621 689 - -
Bva13g02691 1254 PIRSF SMC 8 1244 IPR024704 GO:0005524|GO:0016887
Bva13g02691 1254 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1246 - -
Bva13g02691 1254 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Bva13g02691 1254 Coils Coil 342 362 - -
Bva13g02691 1254 Coils Coil 1034 1054 - -
Bva13g02691 1254 Gene3D - 479 592 - -
Bva13g02691 1254 SUPERFAMILY Smc hinge domain 481 712 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Bva13g02691 1254 Coils Coil 859 886 - -
Bva13g02691 1254 Coils Coil 198 231 - -
Bva13g02691 1254 SMART SMC_hinge_2 517 663 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Bva13g02691 1254 CDD ABC_SMC1_euk 1126 1241 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Bva13g02691 1254 Coils Coil 405 495 - -
Bva13g02691 1254 Coils Coil 781 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02691 Bva-Chr13 19850763 19862429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02691 8 112 Structural Maintenance of Chromosomes family AT5G61460 34.821 3.48e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02691 K06636 - gmx:100785315 1890.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02691 13 19850763 19862429 Bva13g02691 13 19850763 19862429 ECH