Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02683 ATGGAATCAGCATTTGGAAGAAATCGTCTCAAAGATAATGACAATATGGGAAATCTTTCAGTTCCCCCTGGTTTTAAatccctttcttctttcaaccTTAAAAGGCTtggaaaagttgaagaaaCCGATAAGTCTACGGCCTTCGTGACTGCTTCTGACGATGAGCTGAACACGATGGCTCAGATGAATAGCATTTCTGCATGTAGGAGCATCATTGAGGATCGACCATGGATAGTGTTTGACCGAAGCAATAGCAACCCTGAAGAATCTGACACGGAGAAGCTTCCTATGGATCTTCCCTTGAATGATTGTCGTCCGAAAGGGGTTACTTGTGGATGTCCTGACTGCAGTAATTGTTTAAAGGTAACAGCAAGTTGGCGTCCTAAGGATGCAAGAAGAGATGTCCTTCATGAAGCTCCTATTTTCCGTCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGTATCCGTTCCAAAGCAGAGACTTATGGAATATGCCGTATCATTCCTCCCTCTTCCTGGCAACCTCCATGTCTTGTTAAGGAAAACAATATATGGGAAAGCTCCGAGTTTGTTACCCAGATTCAGCGGATTGATGGACTTCAAGTTCTGTCTACGCAAGAAATTACAGCTAACTCAAGCGTAAATATAAAgactaaaagaagaaaaggtgaAAAAGTAGATTTGGAATCTCAGCTTGGTAAGAGACGCACTTTCACCTCAAACCACCATGATGTTGAAGACTCGATGTCTAAACCTGGTCCTAGCTTCAGTCTCAGAGCTTTAAAGAAACTCGCAGATGAATTCAAGATGCAGTACTTCAACTGTAAGGATAGTGTCATGGCTCCTAATATAAATCCGTCATTACATCAAGAGCAGTGGGAGCCTTCTGTGGAGAATCTTGAGGGTGAATATGGACGGATTGTCCAGAATCCTACTGAAGAAATTGAGGTGCTTTGCGGTAACAACTTGGAGGCTGCAGGTTTTAGCAGCGGATTTCCAACAATATCTAGTCCTTTAGAGACATCTAAGTATCCTGAATATGTGAAATCTCAGtggaatttaaataatataaatagactGTCAGgttctcttctttcctttgaAAGCTCTGAAGCTGCCTGCAATTTTATTCGGATTCATGTTGGAATGTGTTTTTCATCGCTCGGTTGGAGAGTTGAAGAGCACCAGTTATACTCATTGTGCTACATGCATTTGGGTGAACCTAAAGTGTGGTACGCCATCCCAGGAAGATTTGCTGCTAGCTTTGAAGATGTTAGGAGGAAATATTTCTCAGATCTGTTTACAGGACGGTCTGACTTGCCTAATGCTTTGGTGAGGCAGATTTCTCTTGCCACGTTGAAGTCAGAGGCTATACCGGTATATCGCTGTATTCAGTATCCGCGAGAGTTCGTTCTTGTCTTCCCTGGAGCATATCATTCAGGATTTGATTGCGGGTTCAACTTTTCTGAAGTAGCAAGTTTCGCTCCTCTTGAATGGCTACTTCGTGGACAGAATGTTGTAGAGCTGTATTGTGAACAAAGGAGAAAGACATCAATTTCATATGATAAACTGTTACTGGGAGCGGCTAGGGAAGCTGTAAGAGCACAATGGGAAATCCAACTGTGTAGGAGGACCACTCCAGATAATTTAACTTGGAAAGATGCCTGTGGAAGTAACGGGATCTTGGCAAAAGTATTAGATTCACGTACCAGGAGTGAAAGTTGTAAGAGGGAATTTCTCTGCTCTTCTTTGCGATCAGAGAGGATGGGCAAAGATTTTGATGCTACTTGCAAAAGGGAATGCAG 1817 0.4045 MESAFGRNRLKDNDNMGNLSVPPGFKSLSSFNLKRLGKVEETDKSTAFVTASDDELNTMAQMNSISACRSIIEDRPWIVFDRSNSNPEESDTEKLPMDLPLNDCRPKGVTCGCPDCSNCLKVTASWRPKDARRDVLHEAPIFRPTEEEFKDTLKYIASIRSKAETYGICRIIPPSSWQPPCLVKENNIWESSEFVTQIQRIDGLQVLSTQEITANSSVNIKTKRRKGEKVDLESQLGKRRTFTSNHHDVEDSMSKPGPSFSLRALKKLADEFKMQYFNCKDSVMAPNINPSLHQEQWEPSVENLEGEYGRIVQNPTEEIEVLCGNNLEAAGFSSGFPTISSPLETSKYPEYVKSQWNLNNINRLSGSLLSFESSEAACNFIRIHVGMCFSSLGWRVEEHQLYSLCYMHLGEPKVWYAIPGRFAASFEDVRRKYFSDLFTGRSDLPNALVRQISLATLKSEAIPVYRCIQYPREFVLVFPGAYHSGFDCGFNFSEVASFAPLEWLLRGQNVVELYCEQRRKTSISYDKLLLGAAREAVRAQWEIQLCRRTTPDNLTWKDACGSNGILAKVLDSRTRSESCKREFLCSSLRSERMGKDFDATCKREC 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02683 605 MobiDBLite consensus disorder prediction 231 253 - -
Bva13g02683 605 MobiDBLite consensus disorder prediction 231 255 - -
Bva13g02683 605 ProSiteProfiles JmjC domain profile. 350 515 IPR003347 -
Bva13g02683 605 Pfam JmjC domain, hydroxylase 384 497 IPR003347 -
Bva13g02683 605 Gene3D Cupin 124 499 - -
Bva13g02683 605 SMART JmjN_1 138 179 IPR003349 -
Bva13g02683 605 ProSiteProfiles JmjN domain profile. 139 180 IPR003349 -
Bva13g02683 605 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 86 605 - -
Bva13g02683 605 MobiDBLite consensus disorder prediction 1 21 - -
Bva13g02683 605 SUPERFAMILY Clavaminate synthase-like 256 542 - -
Bva13g02683 605 SMART cupin_9 350 515 IPR003347 -
Bva13g02683 605 Pfam jmjN domain 140 173 IPR003349 -
Bva13g02683 605 PANTHER LYSINE-SPECIFIC DEMETHYLASE 86 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02683 Bva-Chr13 19803035 19808224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02683 11 605 JUMONJI Transcription Factor Family AT1G08620 44.572 6.59e-158 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva13g02683 JmjC 5.8e-29 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02683 - - gmx:100804864 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02683 13 19803035 19808224 Bva13g02683 13 19803035 19808224 ECH