Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02677 atgGAGGAAGACGATGATAAAAATTTGCTTTCCAGTTTGGGCATTAAGTCTGCGAATCCTGAAGATATTGAACGGGACATATTAGCTAAGGCAAGGAACGAGGATGTGGCTATTGCTGAAGCTGAAGGGAGTGCCAAGGAGGAATCTCCTCAGAAGTTTGAAAATGTTGATCCATCGTCCATTAGCAAAGCAGAAATTTTTCATAAGTTGAGGGCAGTAGAATTTGAGATAGATGCTGTCGCCTCCACTATTCAACAAGTGAGAAATGTTGCGGATAATGAAGATTCTAGTGATGTTGGTGATGACATCCAAGAGAAAAGGATTACTAAAGATGATTCATCCGATGATTTGAATCTTCAGCATGCTCTTGCTGCAGATAGGCTAAGAAGCCTAAAGAACACAAAGGCTCAACTAGAGAAAGAACTTTCAGATTTATGCAAGGATAAACCATCTGAAATTATTGGGGATGAAAAATTGCTCCTTAGCTTGGTTAAGGAAGATTCAAGACCTAAGAGGAAGCAAAAAGAAGTTCAAAAATTACCCAGAAGCTCAGGAAAACGACACAAAAGAGTCTCATTTAATGACGATGATGATTTTGACTCAGTTTTGGATGCAGCCTCTGCAGGCTTTGTCGAGACAgAAAGGGATGAATTGGTGAGGAAGGGAGTTTTAACCCCCTTTCATAGGCTGAAGGGCTTTGAGCGTCGTATTCAACATCATGAAACTTCTAGTAGTTATAATGCAGTGGAGGAAGAAAACATTCATGATCCTGCCTCTTCTAGCGTTGAAAGAACTGCCAGGTCAATGTCCCAGGCAGCAAGAGCTCGCCCAACAACCAAGCTGCTTGAATCTGAAGCTCTTCCAAAGCTTAATACACCCACTCGTCCTTTTCACTGGCTTAAGAAACCACTGAAACTTCCTCAATCCCAAGAAGAAAAggtagagaaaaataaagaatcaaaaaggaggaagaagcgGCCTTTACCTGGTAGGAAATGGACAAAGCGTGTTTCTCAGGAGGAAAACAACATAGCAGAAAGTGAATATGCAAATGATGATTTGGTCACTTCTAGTTCTGCGAATTTAGAGGCAGAAGATGTTGAACATGATGATTATCAACCTTCATATATAACCTTGGAAGGTGGATTGAAAATCCCTGATAACATTTTTGATGCTTTATTTGACTATCAAAAGGTGGGTGTTCAGTGGTTGTGGGAACTGCATTGCCAAAGAGCTGGTGGTATTATTGGTGATGAAATGGGTCTGGGTAAAACCATCCAAGTCCTATCTTTTCTTGGTGCTTTGCATTTCAGTGGCATGTACAAACCGAGCATTGTTGTCTGTCCTGTTACACTCTTGCGACAGTGGAGAAGGGAAGCTAGAAAGTGGTACCCAAAGTTCCGCATAGAGCTTTTACATGATTCTGCTCAGGATCCCTCTGATAGAAAGAAGCGTGCCAAATCTGACGAAACAGATGATGAGAGTGATAGTTCAATTGACAGTGATTATGAGAGTAGTACACCAtccagaaacaaaagaaaatggaaatccTTGATAAATCGAGTCGTGAAATCAAAATCTGGATTGCTTATCACCACTTATGAGCAACTCAGAATTTTGGGGGACCAGTTGCTCGACATTGAATGGGGTTACGCAGTTCTTGATGAAGGACATAGAATAAGGAATCCAAATGCTGAAACTACCCTGGTTTGCAAACAGCTACAGACTGTACACCGCATCATCATGACTGGTTCACCTATTCAGAATAAATTGACTGAACTATGGtcattgtttgattttgtcttCCCTGGCAAATTGGGTGTGTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCCATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCATACAGATGTGCTGTGGTGCTTCGTGATTTAATCATGCCTTATCTTCTTCGACGAATGAAGGCTGATGTAGATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTATTGTGCAGCCTTACATCAGAGCAAGTATCTGCTTATCGAGCATTTTTAGCTAGCAGTGAAGTGGAGCAAATCTTAGATGGACACAAGAATTCTCTTTATGGAATTGATGTGATGCGTAAGATCTGCAACCACCCTGACCTGCTTGAAAGGGAACATGCCTTTAGGAATCCAGATTATGGAAATCCTGAACGTAGCGAGAAAATGAAAGTTGTAGCTCAAGTACTTAATGTTTGGAAGGAACAGGGTCACCGTGTGCTTCTTTTTACTCAAACCCAACAAATGCTCAATATTATTGAGAATTTTCTGACAACTGCTGGTTATAATTACCGAAGAATGGATGGTGTCACCCCCGTAAAACAGCGAATGGCTTTAATAGATGAATTTAATGCTTCAAGTGAggtatttatctttattttaacaacCAAAGTTGGGGGTTTGGGGACAAATCTTACTGGTGGAAACAGGGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGACATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAACGGGATGTAACAGTTTATAGGTTGATCACACGTGGGACTATAGAAGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTCACAAATAAGATATTGAAAAACCCACAGCAGAGAAGATTCTTCAGAGCTCGGGACATGAAAGATCTTTTCACACTGAATGTGGATGGAGACAATGGATCAACtgaaacatcaaatattttccGTCAGATATCTGAAGATGTAAATATTGTTGGGGCACATAGCGATAAGCAGGATAAGCGGAAACATTCCCAAGATGCTGAACCGTGTTCTAATGATGTTGCGGCTGATAATGATGACAAATCCGAGACATCACCCTCAGGGGGAAAGGGGAAAGAGAAAGTTGATCCTAGTGATGAGGAgacaaatatattgaaaagtcTTTTTGATGCCAATGGAATACACAGTGCCGTGAACCATGATTTGATCATGAATGCTCACGATGACGAGAAGATGAGGCTTGAGGAGCAAGCTTCTCAGGTTGCCCAAAGAGCTGCAGAAGCTTTACGTCAGTCGCGAATGCTCCGAAGCCGTGACAGGGTCTCTGTTCCTACATGGACAGGAAGGTCAGGAGCTGCCGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACCGTGAATGCTCAGTTGATAGATAATGGCAAGGCATCAGATGAATTATCCAGCGATGGAACTAACAAATTAAATGGCTCTGCTGCTGGGGCATCTGCTGGTAAGGCATTGTCTTCGGCTGAACTTTTGGCTCAGCTCCGAGGTAACCAAGAAAAAGCCGTTGGTGCGGGGCTTGAACGTCAGTTTGATTTGGCCTCAAGCTCTACTAATCAAACAAGATTGACAGATGTTGGACCTTCTAGGGCTTCTGAAAAATTAACTAGTGTGCAACCTGAAGTATTGATTCGGCAAATCTGTACCTTTCTCCAACAGAGAGGGGGTAGTTCCGATTCTGCAAGCATAGTTCAGCATTTCAAGGACAGGATACCCTCAAAGGATCTCGCCTTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGGAGAAAGGACCAGATGGATCATATTGGATTCTGAAATCGGACTATCAAGAATG 3665 0.4085 MEEDDDKNLLSSLGIKSANPEDIERDILAKARNEDVAIAEAEGSAKEESPQKFENVDPSSISKAEIFHKLRAVEFEIDAVASTIQQVRNVADNEDSSDVGDDIQEKRITKDDSSDDLNLQHALAADRLRSLKNTKAQLEKELSDLCKDKPSEIIGDEKLLLSLVKEDSRPKRKQKEVQKLPRSSGKRHKRVSFNDDDDFDSVLDAASAGFVETERDELVRKGVLTPFHRLKGFERRIQHHETSSSYNAVEEENIHDPASSSVERTARSMSQAARARPTTKLLESEALPKLNTPTRPFHWLKKPLKLPQSQEEKVEKNKESKRRKKRPLPGRKWTKRVSQEENNIAESEYANDDLVTSSSANLEAEDVEHDDYQPSYITLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIVVCPVTLLRQWRREARKWYPKFRIELLHDSAQDPSDRKKRAKSDETDDESDSSIDSDYESSTPSRNKRKWKSLINRVVKSKSGLLITTYEQLRILGDQLLDIEWGYAVLDEGHRIRNPNAETTLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVDAQLPKKTEHVLLCSLTSEQVSAYRAFLASSEVEQILDGHKNSLYGIDVMRKICNHPDLLEREHAFRNPDYGNPERSEKMKVVAQVLNVWKEQGHRVLLFTQTQQMLNIIENFLTTAGYNYRRMDGVTPVKQRMALIDEFNASSEVFIFILTTKVGGLGTNLTGGNRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFRARDMKDLFTLNVDGDNGSTETSNIFRQISEDVNIVGAHSDKQDKRKHSQDAEPCSNDVAADNDDKSETSPSGGKGKEKVDPSDEETNILKSLFDANGIHSAVNHDLIMNAHDDEKMRLEEQASQVAQRAAEALRQSRMLRSRDRVSVPTWTGRSGAAGAPSSVRRKFGSTVNAQLIDNGKASDELSSDGTNKLNGSAAGASAGKALSSAELLAQLRGNQEKAVGAGLERQFDLASSSTNQTRLTDVGPSRASEKLTSVQPEVLIRQICTFLQQRGGSSDSASIVQHFKDRIPSKDLALFKNLLKEIATLEKGPDGSYWILKSDYQE 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02677 1221 MobiDBLite consensus disorder prediction 240 349 - -
Bva13g02677 1221 Pfam Helicase conserved C-terminal domain 740 850 IPR001650 -
Bva13g02677 1221 Coils Coil 121 148 - -
Bva13g02677 1221 Gene3D - 660 951 IPR027417 -
Bva13g02677 1221 MobiDBLite consensus disorder prediction 1039 1058 - -
Bva13g02677 1221 MobiDBLite consensus disorder prediction 478 492 - -
Bva13g02677 1221 MobiDBLite consensus disorder prediction 933 978 - -
Bva13g02677 1221 CDD SF2_C_SNF 733 861 - -
Bva13g02677 1221 Gene3D - 363 653 IPR038718 -
Bva13g02677 1221 MobiDBLite consensus disorder prediction 170 193 - -
Bva13g02677 1221 Coils Coil 1003 1030 - -
Bva13g02677 1221 Pfam SNF2-related domain 396 718 IPR000330 GO:0005524|GO:0140658
Bva13g02677 1221 MobiDBLite consensus disorder prediction 478 510 - -
Bva13g02677 1221 CDD DEXHc_ERCC6 393 603 - -
Bva13g02677 1221 SMART ultradead3 389 612 IPR014001 -
Bva13g02677 1221 MobiDBLite consensus disorder prediction 91 113 - -
Bva13g02677 1221 MobiDBLite consensus disorder prediction 259 277 - -
Bva13g02677 1221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 900 IPR001650 -
Bva13g02677 1221 PANTHER SNF2/RAD54 FAMILY MEMBER 251 1107 - -
Bva13g02677 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 654 IPR027417 -
Bva13g02677 1221 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 251 1107 - -
Bva13g02677 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 912 IPR027417 -
Bva13g02677 1221 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 604 IPR014001 -
Bva13g02677 1221 SMART helicmild6 767 850 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02677 Bva-Chr13 19759138 19765380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02677 693 904 RAD5 or RAD16-like Gene Family AT5G22750 29.302 1.71e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva13g02677 SNF2_N 6.5e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02677 K10841 - gmx:100820025 1845.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02677 13 19759138 19765380 Bva13g02677 13 19759138 19765380 ECH