Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02658 ATGGAGGATTCCGGCAAGAATAGCAGTAATAATAACAGTAAATTCTTGAATCCATGGGTGCTTCAATTCCAGAAAATGGGTCTTGAACTCAAGTGCCCTCTTTGTCTAAACTTATTCCGTAGGCCGATGTTACTGCCTTGCAACCACATATTCTGCaaTTCCTGCATATCTGATTGCCACGGGCCTGGATTAGAATGTGCTATCTGTAATACTCAGTATGCTCATAGAGATCTAAGGCAGGTGCCTTTTATTGAAAACATGGTAACGATCTTTAGATGTTTGGATGGCACCTTTTCTGCCAATATGTTACAGCAACTTTCTTCTGATGACATGAGGGTTTCGGAGCCATGCCAAGCATTGTTGAATTCGACTTTGAATAACAAATCAACTGAGAAATTATCTGAAACATCCTTAGGGGATAATCTATGCTGTGGGCGGCCCATCTTTTCCTTAGCAACtaataaacatattaataaaCCGAGTTTAAATCACTGCAATGAATTTGCGATCGACCAGAATAAAAAAGGTGAAAGGAGTGGCATTGTAGTGCATGGTAAATCTGAGGAATGTTCGCAGCAGGAAGTCAGGGACCATGAAGAGTTTGGAGTCGTGGAAATGGAAACTAATCAAGTGACACAACCATTGCCAGACAGCCCTCCATTTTGTGATACTAAAGGTTCAGATAATGACTGCAGTGATCAAGATAGTGCTCATATCTTGGTTGCTGGGAAATTGGAGAGTTCTTCATTGAAGAGAGCAAGCAAAGCAAATGGAAATTTGGAAGGAAGAATGGTGCAGTTAAGGTCTGAAAGTTCTGATTCTAAAAGTGATGGTCTTGTGAGAGAGCTCAAGAGGCAAAAGAATCTTAACCATGGAGCATCAGACATGAGCTTGAAAAGTGATAATGTCATTCAATTTCAACCTACTGTCAGACCTCATTGTAAGTCAGTGGATTCCCGCTGTAACCTGGAACTTAAATCTGGGGTGGACCCTGGTGCACTTTTGCCAGCAATTCCTGACGACTCGTGTTCTAATACCttcatttgttcattttgtcAATCCTCTAAAGTCTCAGagGTCACTGGACCGATGTTGCATTATGCAAATGGGAACTTGGTAACTGGAGATGCAGCAATCCAACCTAATGTCATACATGTGCATGGAACTTGCATTGACTGGGCACCGCAAGTATATTTTGTTGGTGAATCAATTAAGAATCTGAAGGCAGAACTGGCAAGGGGAGCAAAGCTTAAGTGCAGCATATGCGGTTTAAAGGGAGCTGCTCTTGGCTGCTATGTCAAATCCTGTAGAAGAACTTATCATGCTCCTTGTGCAATGGAAATGTCAACCTGCCGTTGGGATCATGAGGACTTTCTTATGCTCTGTCCAGCTCATTATCGCGTCAGATTCCCAAATGAGAAATCCAAGTCTAAGAAAAATGCCCCTCAGAAGCATCATGTGACATCTCATTCGGCATCTGAGCCATCAAAACCTTTGGAAGCTCCAACTGATGATGGCAAAAACTGGATTTTTTGTGGGTCTGCTCTATCTTCTGAAGAAAAGATACTTTTGATCAACTTGGCAAGTAGGATTGGTGCAACTGTGACCAAGTTCTGGACCCCTGAAGTCACACATGTGATTGCAGCAACGGATGCTAATGGTGCTTGCTCCAGGACATTGAAGGTTCTTATGGCCATTTTGAATGGAAGATGGGTTCTTAAAATGGATTgGGTAAGAGCATGCATGGAAGTGAGACATCCTGTGGAGGAAGAACCATATGAAATTAGTCTTGACAACCATGGGTGTCAAGGTGGCCCAAAAACTGGCAGACTGCAAGCAATGAACAATGAGCCCAAGCTATTTAGtgggttaaatttttatttttctggtgATTATATGCCGGCTTATAAGGAAGATCTTGAGGACTTGGTTGTAGCAGGAGGTGGTTCTGTTTTGGGGAACAAAGAAGAATTGGTAACAGTAGGCCATAAATGCGAGGCGACTTCTTCAAAACTGTTTATTGTTTACAATCTTGATCCCCCGCAAGGATGTAGGTTGGGGGAGGAAGTTTCAATTCTTTGGCAGAGATTAAGTGAGGCAGAGGATTTAGCTTCTAAAACGGGTTCTCAAGTCATTGGTCACACGTGGCTTTTGGAGTCAATTGCTGCATCTAAATTGCAGACTTTTGTCAGCTA 2195 0.4159 MEDSGKNSSNNNSKFLNPWVLQFQKMGLELKCPLCLNLFRRPMLLPCNHIFCNSCISDCHGPGLECAICNTQYAHRDLRQVPFIENMVTIFRCLDGTFSANMLQQLSSDDMRVSEPCQALLNSTLNNKSTEKLSETSLGDNLCCGRPIFSLATNKHINKPSLNHCNEFAIDQNKKGERSGIVVHGKSEECSQQEVRDHEEFGVVEMETNQVTQPLPDSPPFCDTKGSDNDCSDQDSAHILVAGKLESSSLKRASKANGNLEGRMVQLRSESSDSKSDGLVRELKRQKNLNHGASDMSLKSDNVIQFQPTVRPHCKSVDSRCNLELKSGVDPGALLPAIPDDSCSNTFICSFCQSSKVSEVTGPMLHYANGNLVTGDAAIQPNVIHVHGTCIDWAPQVYFVGESIKNLKAELARGAKLKCSICGLKGAALGCYVKSCRRTYHAPCAMEMSTCRWDHEDFLMLCPAHYRVRFPNEKSKSKKNAPQKHHVTSHSASEPSKPLEAPTDDGKNWIFCGSALSSEEKILLINLASRIGATVTKFWTPEVTHVIAATDANGACSRTLKVLMAILNGRWVLKMDWVRACMEVRHPVEEEPYEISLDNHGCQGGPKTGRLQAMNNEPKLFSGLNFYFSGDYMPAYKEDLEDLVVAGGGSVLGNKEELVTVGHKCEATSSKLFIVYNLDPPQGCRLGEEVSILWQRLSEAEDLASKTGSQVIGHTWLLESIAASKLQTFVS 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02658 731 Coils Coil 250 270 - -
Bva13g02658 731 SMART ring_2 419 465 IPR001841 -
Bva13g02658 731 SMART ring_2 32 69 IPR001841 -
Bva13g02658 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 102 IPR013083 -
Bva13g02658 731 ProSiteProfiles BRCT domain profile. 616 731 IPR001357 -
Bva13g02658 731 SUPERFAMILY BRCT domain 509 596 IPR036420 -
Bva13g02658 731 SUPERFAMILY BRCT domain 620 727 IPR036420 -
Bva13g02658 731 Gene3D BRCT domain 506 611 IPR036420 -
Bva13g02658 731 ProSiteProfiles Zinc finger RING-type profile. 32 70 IPR001841 -
Bva13g02658 731 SMART BRCT_7 618 724 IPR001357 -
Bva13g02658 731 SMART BRCT_7 501 585 IPR001357 -
Bva13g02658 731 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Bva13g02658 731 Pfam BRCA1 C Terminus (BRCT) domain 516 582 IPR001357 -
Bva13g02658 731 ProSiteProfiles BRCT domain profile. 510 595 IPR001357 -
Bva13g02658 731 ProSiteProfiles Extended PHD (ePHD) domain profile. 346 466 IPR034732 -
Bva13g02658 731 MobiDBLite consensus disorder prediction 473 502 - -
Bva13g02658 731 Gene3D BRCT domain 618 724 IPR036420 -
Bva13g02658 731 SUPERFAMILY RING/U-box 29 92 - -
Bva13g02658 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 467 IPR013083 -
Bva13g02658 731 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 12 728 - -
Bva13g02658 731 CDD BRCT_Bard1_rpt1 509 588 - -
Bva13g02658 731 Pfam RING-type zinc-finger 32 57 IPR027370 -
Bva13g02658 731 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 12 728 IPR031099 GO:0006281|GO:0006974
Bva13g02658 731 Pfam PHD-like zinc-binding domain 387 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02658 Bva-Chr13 19644553 19651721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02658 539 653 Core DNA Replication Machinery Family AT4G02110 30.833 3.30e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02658 K10683 - gmx:100784883 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02658 13 19644553 19651721 Bva13g02658 13 19644553 19651721 ECH