Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02646 ATGGAAGCACGTCCAGCATTCTCCATTGAAAGATCAAGTGTGAAGCAACTGACTAACATGGGGGTGTCTGGAGCACTGTCTTCGTCCTTGCCAGTCCTCCCAACACCCCCGGAAGAGAAGTACCCCAAGTTGCCGGACTCTCAGCAGGCGACTGCAGAGAAAGAGCTTATGACAAGACCTCTTACCAATTCAAGTCACTTAAATTCCAGCGGAGTAGTTGGTCACTTGTTTTCATCATCACCTGGATATTCAACTGATCTTCATCACTCTTCCCTTTCACCCCATGAGAAGCACTCAAGAAATGCTCATTTTATTTCACAGTCATTGAGTAACATGGGATCGTTGCCATTACTCTATTCTTCAAATAATGAACCACTACCTTCTACAACATCAAGTCATTATTCAAAAGAGAGCAGTGCTCTCTGGAATGCAGATTCCTTGTCAAGCTTTCTTGATTTTCCTGTAAATACCTCTATTGAGAATAGTCAAGTAGAAAACAGTGCCAGCACTATCATGGCATCTGAGGAGTATTGTAAACGAAATGAGTGGCATGATTGGGCCGACCAACTAATTAGTGATGATGAAACCTTGACTTCTGACTGGAATGATCTTTTTGTTGATAACAACATTCCTGATCTTGAACCAAAGGTGACAAGCCAGGTTTCAAAATTGTCTTCACAATTTCCAGGGCACCAGTTCAAAGGTCAGCAGGTGGTTTCTGCTCCATCTGGAGAAAATTGTGCTATTGCCCCCCCTTCTTCCTCAGCAAATTCTGCCTCCGTAAAGCCACGGATGCGATGGACACCAGAGCTTCATGAGGCCTTTGTTGAAGCTGTCAACCAACTTGGTGGGAGCGAAAGAGCTACACCTAAGGGTGTCCTGAAGCTCATGAAGGTTGAAGGCTTAACTATATATCATGTTAAAAGCCACCTGCAGAAATACAGGACAGCTAGATATAGACCTGAAACATCAGAAGGATCCTCAGAGAAAAGGGTTACTCCCGTTGAACAGGTGTCATCTTTAGACTTGAAAACTGGTATGGAGATCACTGAAGCTCTGCGATTGCAAATGGACGTTCAGAAACGGCTGCATGAACAACTCGAGATACAACGAAATCTACAGTTGCGAATCGAAGAACAAGGGAGGTACCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGGCATTGAAAAGTTCAAGGCGCCAGCATCTTCTTTGGAGAGTCCCTCTGCAGCAGCTTCGGAGGCTATTAAAGATTCTCCTGCTAAAAGTGAAACGGAAGCCTCTAAATTGGACCATTCCAAGACAGAACCTGAGCAAGCTAAGGATAATATCACCATGGAAGAAAGCTCACCGCCAAAAGAAGTGGGTGAAAAGCATAATGCTCCCGAAACTAAGGTTTCAGAGAATTCTGAGCCGCAGCCACATGCTGGTGAAGATGATACTCAACCCTCAAAGCGTCAAAGGACTGAAGAGTA 1478 0.4452 MEARPAFSIERSSVKQLTNMGVSGALSSSLPVLPTPPEEKYPKLPDSQQATAEKELMTRPLTNSSHLNSSGVVGHLFSSSPGYSTDLHHSSLSPHEKHSRNAHFISQSLSNMGSLPLLYSSNNEPLPSTTSSHYSKESSALWNADSLSSFLDFPVNTSIENSQVENSASTIMASEEYCKRNEWHDWADQLISDDETLTSDWNDLFVDNNIPDLEPKVTSQVSKLSSQFPGHQFKGQQVVSAPSGENCAIAPPSSSANSASVKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPETSEGSSEKRVTPVEQVSSLDLKTGMEITEALRLQMDVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIEKFKAPASSLESPSAAASEAIKDSPAKSETEASKLDHSKTEPEQAKDNITMEESSPPKEVGEKHNAPETKVSENSEPQPHAGEDDTQPSKRQRTEE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02646 492 SUPERFAMILY Homeodomain-like 261 316 IPR009057 -
Bva13g02646 492 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 262 316 IPR006447 GO:0003677
Bva13g02646 492 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Bva13g02646 492 MobiDBLite consensus disorder prediction 473 492 - -
Bva13g02646 492 Gene3D - 261 320 - -
Bva13g02646 492 MobiDBLite consensus disorder prediction 403 492 - -
Bva13g02646 492 Pfam MYB-CC type transfactor, LHEQLE motif 347 394 IPR025756 -
Bva13g02646 492 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 27 492 - -
Bva13g02646 492 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Bva13g02646 492 MobiDBLite consensus disorder prediction 420 466 - -
Bva13g02646 492 MobiDBLite consensus disorder prediction 24 49 - -
Bva13g02646 492 MobiDBLite consensus disorder prediction 316 337 - -
Bva13g02646 492 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 27 492 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02646 Bva-Chr13 19600377 19605554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02646 1 454 G2-like Transcription Factor Family AT4G28610 47.742 2.50e-111 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Bva13g02646 Myb_DNA-binding 9.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02646 - - gmx:100810560 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02743 04 23837385 23841902 Bva13g02646 13 19600377 19605554 BWGD
Bva13g02646 13 19600377 19605554 Bva13g02646 13 19600377 19605554 ECH
Bva04g02743 04 23837385 23841902 Bva13g02646 13 19600377 19605554 ECH