Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02625 ATGTACTCCCCTAACAGCAGTATTTTGGTCTCACCCAGTAGCTCCCGGTCGGTGACGGAGACCGTCAATGGTTCGCATAACTTCGTGATCAAAGGCTACTCTCTCGCCAAAGGGATCGGAGTTGGGAAGCACATAGCCAGCGAGAATTTCACCGTAGGAGGGTACCAGTGGGCCATTTACTTCTACCCAGATGGAAAAAATCCTGAGGACAATTCTGCTTATGTCTCAGTCTTCATTGCGCTTGCCAGCGAGGGCACTGATGTGCGGGCACTCTTCGAGCTGACCTTGGCGGACCAGAGCGGAAATGGGAAGCATAAGGTTCATAGCCACTTTGATCGCTCGCTTGAGAGCGGGCCATATACGCTCAAGTACAGAGGCAGCATGTGGGGCTACAAACGTTTTTTCAAACGAGCTCAGCTTGAGGCATCCACGTTCCTTAAGGATGACTgcttgaaaataaattgtacTGTTGGTGTGGTGGTTTCTTCCATAGATTgttcaaaattaaacacaataCATGTTCCTGAATCTGATATTGGAGTCCAATTTGGCATGCTATTGGAGAGTGAAGAAGGATCAGATGTTACTTTTTCTGTCTCTGGGGAAAAGTTTCATGCGCATAAGCTTGTGTTGGCTGCTCGGTCTCCCGTATTTGAGACTGAGTTTTTCAATGAAACTGAGGAAGATAATCATGAAGTAGTTGTTGCAGACATGGAACCTAGGGTTTTCAAGGCTTTGcttcatttcatttataaagACACTCTTATAGAAGACGAAGAGCTCTTCACGTTACGTTCATCATTCTTGCCATCATTATCTGACACATTTGCTGCAAAATTGTTAGCTGCCGCAGAAAAGTATGGTTTGCCAAGACTTAAACTGATGTGCGAATCTGTACTCTGCAGAGATATATCTGTAGATTCTGTTGCTTATATTCTGGCCCTTGCTGACCGTTATCATGCTACAGAATTAAAGTCCATTTGTCTAAAATTTTCCGCTGAGAACCTTGTTGCTGTGATGCAATCTGATGGTTTTGAGTATCTCAAGGAAAACTGCCCATCGCTGCAATCGGAACTACTAAAGACAGTGGCTGGGTGTGATGAGGAATTTAGTGGAGAGGGAAAATGTCGAAGTGTTTGGGCTCAGTTCTCTGATGGTGGTGATACCAACGATAGGAGTGTTAGACAACAAACTTGGGAAAATGGAGTTGAGAGAAGTCAAAGCCTATGGGTTCAGCTTTCTGATGGTGGTAACAATAATGGTAGAAGTCCAGGGCAAGATTG 1283 0.4357 MYSPNSSILVSPSSSRSVTETVNGSHNFVIKGYSLAKGIGVGKHIASENFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLADQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIHVPESDIGVQFGMLLESEEGSDVTFSVSGEKFHAHKLVLAARSPVFETEFFNETEEDNHEVVVADMEPRVFKALLHFIYKDTLIEDEELFTLRSSFLPSLSDTFAAKLLAAAEKYGLPRLKLMCESVLCRDISVDSVAYILALADRYHATELKSICLKFSAENLVAVMQSDGFEYLKENCPSLQSELLKTVAGCDEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQSLWVQLSDGGNNNGRSPGQD 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02625 427 CDD MATH 24 157 IPR002083 GO:0005515
Bva13g02625 427 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 8 377 - -
Bva13g02625 427 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 22 161 IPR008974 GO:0005515
Bva13g02625 427 SUPERFAMILY TRAF domain-like 20 159 - -
Bva13g02625 427 SUPERFAMILY POZ domain 173 302 IPR011333 -
Bva13g02625 427 Gene3D Potassium Channel Kv1.1; Chain A 169 298 IPR011333 -
Bva13g02625 427 SMART math_3 28 140 IPR002083 GO:0005515
Bva13g02625 427 CDD BACK_AtBPM-like 301 362 IPR034090 -
Bva13g02625 427 CDD BTB_POZ_BPM_plant 179 301 - -
Bva13g02625 427 ProSiteProfiles BTB domain profile. 193 259 IPR000210 GO:0005515
Bva13g02625 427 Pfam BTB/POZ domain 185 302 IPR000210 GO:0005515
Bva13g02625 427 ProSiteProfiles MATH/TRAF domain profile. 23 157 IPR002083 GO:0005515
Bva13g02625 427 Gene3D - 303 377 - -
Bva13g02625 427 SMART BTB_4 193 304 IPR000210 GO:0005515
Bva13g02625 427 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 8 377 IPR045005 GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02625 Bva-Chr13 19512186 19516439 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Bva13g02625 BTB 3.9e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02625 K10523 - gmx:100818306 764.607