Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02610 ATGTCTCAGAAGGATCCCGCTATCAAGCTCTTTGGCAGGAAGATTCCCTTGCCGGAATGTCAGATTCCGGCTACCTCTCCGATGGGTTCTCAGATTCCGACCAAGTCAGAAACAATGgaTAGTTGCAATGGCTTGAAGGATACAGAAACCGAAAAGTCTAGTGCAGAAAACTCTGAGCAACAAGAGGATTCCTCTGATTTAGGAGATGGTAATAAGGGATCCAATCACACTGAGCTAAATGTAAATCCCAAGGCTGTCCAAGGTAAGGTGGATAGCAGTATTACAGATCAAGATAAAGCCTTCAAGAAACCAGATAGGATTCTTCAGTGTCCGCGATGCAACAGTTTGGacacaaaattttgttatttcaataACTACAATGTGAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTACTGGACAGCTGGTGGAACAATGAGAAATGTTCCTGTGGGCGCTGGGAGACGCAAGAACAAACATCTGGCTTCTCAATATCGCCACATTATAGTAGCCTCTGATGGAATTCCAAGCACCAGGTTAGACAGCACAGACGAGTCTGATGTCCCTCTCTGTGAATCCATGGAGTCAGTGCTTAATCTTAAAGACCAGAAAAGAAGTACCGATGCTAATTCTATGAGTTGTGCAGAAAATGGGGAGGAGATGTCAATGTGTGCATCTTCTGTGACAAGTGCTGGTACTCAGGGAAATGAGTTATCAGAACTTATGGTGCAAAGGGAGCGAGGTGTTTCTTCTAACGAGCCTCACACATCGCATCATTTGCAGTGTCACCCTGTTCCTCCATGGGTCTTTCCTATGAATCCAGGTTGGAACAATTTTGCTTCCATGGCCGGAGCTCATCAAGCTTCGGAGCGCAAGTGTAATCCATATAGTACAGGTCAGACTCCAATGCAGTGGTATCCCACCCCTGTAGTAACAGTTTCAGGCGTTTGCCCACCAAGCATAAGCATACCTTTACAGTTTGTACCATCATCATACTGGGGTGGCGCACCTATATGGACTGCTGGAACTGCCGCATTGTCATCAGGATCCAATGCCTGTCTCTCTCCAACGTCTTCTACAAGTAATAGCTGCTGCTCAGGCAATGGTTCTCCAACCTTGGGCAAACACTCTAGAGATACAGTTTTcacaaatgaagagaaatcTGACAAATGTGTTTTGGTTCCGAAGACCCTTAGAATCGACGACCCAAATGAGGCTTCGAGAAGTCCTATATGGACTACATTAGGCATTAAACATGACAATGGAGCTGGCAAAGACTGCATATTGGGTGTCTCTCAAATCTTTGAAACTAAGTCTGCTGCCGTTTCTCGTGCTCACTCATTCCAGGAGATCACATA 1364 0.445 MSQKDPAIKLFGRKIPLPECQIPATSPMGSQIPTKSETMDSCNGLKDTETEKSSAENSEQQEDSSDLGDGNKGSNHTELNVNPKAVQGKVDSSITDQDKAFKKPDRILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVASDGIPSTRLDSTDESDVPLCESMESVLNLKDQKRSTDANSMSCAENGEEMSMCASSVTSAGTQGNELSELMVQRERGVSSNEPHTSHHLQCHPVPPWVFPMNPGWNNFASMAGAHQASERKCNPYSTGQTPMQWYPTPVVTVSGVCPPSISIPLQFVPSSYWGGAPIWTAGTAALSSGSNACLSPTSSTSNSCCSGNGSPTLGKHSRDTVFTNEEKSDKCVLVPKTLRIDDPNEASRSPIWTTLGIKHDNGAGKDCILGVSQIFETKSAAVSRAHSFQEIT 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02610 454 Pfam Dof domain, zinc finger 106 162 IPR003851 GO:0003677|GO:0006355
Bva13g02610 454 MobiDBLite consensus disorder prediction 42 59 - -
Bva13g02610 454 MobiDBLite consensus disorder prediction 24 41 - -
Bva13g02610 454 ProSitePatterns Zinc finger Dof-type signature. 110 146 IPR003851 GO:0003677|GO:0006355
Bva13g02610 454 ProSiteProfiles Zinc finger Dof-type profile. 108 162 IPR003851 GO:0003677|GO:0006355
Bva13g02610 454 MobiDBLite consensus disorder prediction 1 98 - -
Bva13g02610 454 MobiDBLite consensus disorder prediction 67 94 - -
Bva13g02610 454 PANTHER CYCLIC DOF FACTOR 2 1 452 IPR045174 GO:0003700|GO:0006355
Bva13g02610 454 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02610 Bva-Chr13 19408775 19411991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02610 5 425 C2C2-Dof Transcription Factor Family AT5G39660 37.603 1.73e-63 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva13g02610 zf-Dof 4.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02610 - - ccaj:109792807 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02610 13 19408775 19411991 Bva13g02610 13 19408775 19411991 ECH