Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02607 ATGAGTTCACAACTCGTCAATGGTGATGGGAATGGTTTCAAAGTAAAAATGAACCTTTTACCTCCTTATTCACTTGTGCCGCATCCTCAATCTCCTTTATCTAACGCTTTTGGGGTTATGGGTTGTGTTAGTCAGATAGAGTCTGGCAAGTCTGAGATGGGTTTTCAAATTCTGAGTCCTTCATTTAATCCAGACAAGAGCAGGGGAAGCAAGAGACCCAGCGATGATGGCGATGGATACTTTGGAGCTGAGAAAAAGAACTTGTCTTTGAAACTTGGTGTGGAAACGGAAGCTAAGAGCTCTGCCACCGTAAGAAATGGCCACACCAAGCTCTGTGCTAGAGGTCACTGGAGGCCAGCCGAAGATTCTAAACTCAAAGAGCTTGTTGCTCAGTATGGCCCTCAAAACTGGAACTTGATCGCTGACCATCTCGAAGGAAGATCAGGAAAAAGTTGCAGATTGAGATGGTTTAATCAGCTAGATCCTAGAATTAACAAGAGGACTTTCTctgaggaagaagaggagagGCTCTTGGCCGCTCATAAGCTGTATGGCAACAAATGGGCAATGATTGCTAGGCTCTTCCCTGGAAGGACTGACAATGCAGTGAAGAACCACTGGCATGTGATCATGGCAAGAAAGCTCAGAGAGCAATCAAGTGTTTATAGGAGGAGAAAgcccaacaacaacaacaacactGAAAATCTTCCAAAGGGATTAAATTTGACTTTAACAAACAATGCTGGCAGTGAATCAACCATGTCAAGTACCATAGATGAATCGACTTCAACCTGCACtgatctctctctcactcCCTCTTCATCCAAACAGCCTCCCATGAATTTTCCTAGTCCAAGACCAGTTATAGGGTCATCTGGAGAAAGAGTGGTGAAAGTTGGGGATATGGGTTTTGACAAGTTCTTTGTTGGTTGGAAGGGATCATCATGTGAAGCTGGATCCATTCAGAAACCTGTGGGTTTGGACCAATCTGGTTATTCAGATTCCAACTCAGAAGTTTCAGTATCTGAGTCAGTTGTCACCAACAGAACCAATCTCTCAGTTTCTGGAGAAAGTGAAACTGTGGGTGATAAGATCAAGATGGCATTCATTGATTTCCTTGGTGTAGGAGCTACATA 1136 0.4137 MSSQLVNGDGNGFKVKMNLLPPYSLVPHPQSPLSNAFGVMGCVSQIESGKSEMGFQILSPSFNPDKSRGSKRPSDDGDGYFGAEKKNLSLKLGVETEAKSSATVRNGHTKLCARGHWRPAEDSKLKELVAQYGPQNWNLIADHLEGRSGKSCRLRWFNQLDPRINKRTFSEEEEERLLAAHKLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKLREQSSVYRRRKPNNNNNTENLPKGLNLTLTNNAGSESTMSSTIDESTSTCTDLSLTPSSSKQPPMNFPSPRPVIGSSGERVVKVGDMGFDKFFVGWKGSSCEAGSIQKPVGLDQSGYSDSNSEVSVSESVVTNRTNLSVSGESETVGDKIKMAFIDFLGVGAT 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02607 378 MobiDBLite consensus disorder prediction 247 289 - -
Bva13g02607 378 SMART sant 113 162 IPR001005 -
Bva13g02607 378 SMART sant 165 213 IPR001005 -
Bva13g02607 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 160 IPR017930 -
Bva13g02607 378 CDD SANT 117 158 IPR001005 -
Bva13g02607 378 MobiDBLite consensus disorder prediction 59 80 - -
Bva13g02607 378 PANTHER OS08G0435700 PROTEIN 85 378 - -
Bva13g02607 378 Gene3D - 114 165 - -
Bva13g02607 378 ProSiteProfiles Myb-like domain profile. 114 160 IPR001005 -
Bva13g02607 378 Gene3D - 167 238 - -
Bva13g02607 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 215 IPR017930 -
Bva13g02607 378 PANTHER MYB PROTEIN-RELATED 85 378 - -
Bva13g02607 378 SUPERFAMILY Homeodomain-like 114 207 IPR009057 -
Bva13g02607 378 ProSiteProfiles Myb-like domain profile. 161 211 IPR001005 -
Bva13g02607 378 CDD SANT 177 208 IPR001005 -
Bva13g02607 378 Pfam Myb-like DNA-binding domain 117 177 - -
Bva13g02607 378 MobiDBLite consensus disorder prediction 247 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02607 Bva-Chr13 19389410 19391926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02607 113 226 MYB Transcription Factor Family AT1G69560 86.842 9.04e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva13g02607 Myb_DNA-bind_6 2.4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02607 13 19389410 19391926 Bva13g02607 13 19389410 19391926 ECH