Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02601 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTAGCATCAAAAAGGGTCCATGGACACCTGAGGAGGATATAATCCTTGTTTCTTACATCCAAGAACACGGCCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGATTGTTAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACTAACTACCTCAGACCAGGAATCAAGAGAGGCAATTTTACTCCCCATGAGGAAGGGATTATAATTCACTTGCAAGCTCTATTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAATGATATAAAGAATTATTGGAACAcccatttaaagaaaaagctgAAGAAATTCCAAGCAGCTTTGGACCCCCAACTGGCATCAGACTCAACAGTTAGTAGTCAGATTTTAAGTAAGAGCTTTAATGAGAGAAGAGGTAATTTAGATATCAGCAGCAACCATGCCTCATCCCCTAGACTTGGTAACTCTTCCACCACCACTACCACTACCTATGCCTCAAGCACTGAGAACATATCAAGGCTCTTAGAAGGTTGGATGAGGTCTTCTCCAAAGCCAGATACCCTTAGTCTGAAAGGCAGcctaaaagagaaagagcttCAAAACAATGACAACTTAGAAAATGATAAGCTGGTGAAGTCTGCATCAGTGCCTGCTTTTGGGTCTTTCCATAACAAAGATGAGCAAGATGGTGGAGATATGGTCTCTCATGAAGAGTTCGATTCCATTTTATCGTTTGAGAACCTAAATAATGGTGGTTGGGACAACTCCACTTGTGACTCCACACCTGATGAAAAAAAGAACGCTGAAGCTGCAAAGGGTGCTGATGAGAAGGCTCATCATGATATAGCAGAGAGGAATAAGCAAAGATCTGAGAATGGCAATGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTCTTGGATGAGAATGTTGGTCAAGTAGAGGAGATGATGGAGATGTCTCCTATGTtcta 995 0.4121 MGRPPCCDKVSIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGIIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALDPQLASDSTVSSQILSKSFNERRGNLDISSNHASSPRLGNSSTTTTTTYASSTENISRLLEGWMRSSPKPDTLSLKGSLKEKELQNNDNLENDKLVKSASVPAFGSFHNKDEQDGGDMVSHEEFDSILSFENLNNGGWDNSTCDSTPDEKKNAEAAKGADEKAHHDIAERNKQRSENGNAPPLSFLEKWLLDENVGQVEEMMEMSPMF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02601 331 CDD SANT 69 112 IPR001005 -
Bva13g02601 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva13g02601 331 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bva13g02601 331 Gene3D - 13 66 - -
Bva13g02601 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva13g02601 331 MobiDBLite consensus disorder prediction 259 308 - -
Bva13g02601 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva13g02601 331 PANTHER TRANSCRIPTION FACTOR MYB60 1 323 - -
Bva13g02601 331 CDD SANT 16 61 IPR001005 -
Bva13g02601 331 MobiDBLite consensus disorder prediction 148 174 - -
Bva13g02601 331 MobiDBLite consensus disorder prediction 267 296 - -
Bva13g02601 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva13g02601 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 323 - -
Bva13g02601 331 Gene3D - 68 137 - -
Bva13g02601 331 MobiDBLite consensus disorder prediction 187 218 - -
Bva13g02601 331 MobiDBLite consensus disorder prediction 198 213 - -
Bva13g02601 331 SMART sant 66 114 IPR001005 -
Bva13g02601 331 SMART sant 13 63 IPR001005 -
Bva13g02601 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Bva13g02601 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02601 Bva-Chr13 19355714 19357560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02601 1 151 MYB Transcription Factor Family AT5G62470 75.796 9.21e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva13g02601 Myb_DNA-binding 1.2e-14 CL0123