Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02580 ATGGTGAGGAAGCGAAAACTGGAGCCTATATCCACCACCGAATCCGTCGAACCTCCGCTGAagcagcagcaacagcaacaAATAGAAGCGCAGGAGGAGACCCAATTGGAGCTTGAAGGCCAAGAGAATGGAGCTGAGTACGaggaagttgaagaagaagtagaagaagaggtagaagaagaagaagaggaagaccCAGAAGAAGATGACGGTGATATTGCCCAAAACGCCAATGATCAGACATATAAGGCTCCGTCAACGTCATCGGCTGCTACGTCCACCGCAGATGAAggtgatgaagatgatgagcCGATACAGAAGCTTCTGGAACCTTTCAGCAAGGATCAAATTGTAAATCTGCTCCGTGAAGCAGCGGATAAACATCGGGATGTTGCAGATCTGATCCGTAAGGTAGCTGATGAGGATCCCGTTCACCGGAAAATCTTTGTTCATGGCCTCGGATGGGACACAACCGCCGAGACCCTCATTAACGTATTCAAGCAATACGGGGAAATTGAAGATTGTAAAGCTGTATGTGATAAGATTTCAGGGAAGTCAAAGGGTTATGGTTTCATTCTGTTCAGGACTCGTCGTGGGGCTCTTAATGCGCTGAAGCAACCACAGAAGAAGATTGGGAACCGGATGACGGCCTGCCAGCTGGCATCAGTTGGTCCGGTTCAACAGCCAACCACCGCACAACCAGCTCCGGCACCACCATTATCAGAGTATACCCAGAGGAAGATTTACGTGAGCAATGTTGGGGCAGATTTGGATCCTCAGAAGTTGCTTGTGTTCTTCTCCAAGTATGGGGAGATAGAGGAAGGGCCATTGGGACTTGACAAGATGACTGGGAAACCAAAAGGTTTCTGCTTATTTGTGTACAAGAGCTTTGAGGGTGCCAAAAAGGCATTGGAAGAACCACATAAGGAATTTGAGGGCCATCTTTTGCACTGTCAGAAAGCTATTGATGGTCCAAAGCCAGGAAAGGGTCAACATCAGCAACACCAGAATCCTCACAGACCACAATTCCAGAGGAATGAGAACCCTAGCTTTGCTGGCGGGGCTGCTGCTGGACCGGGGCATTTGATGGCGCCAACGGGACCAGGAATTGCATTTAAccagggtccagcggctgctCAGACACTGAATCCGGCTCTTGGCCAGGCATTGACAGCATTGCTTGCAAGTCAAGGTGCTGGATTAGGGCTTACTAATTTGTTAGGAACTCTAGGATCAGCTGCTGCGGTAAACCCAGGTGTTCCTGCTGCAGGCCATGGGGTACAGGGGGGATACGGTAACCAGCAAAATATAAGCCCTGGGGTTATTGGAGGGTACGCAAACCAGGGTGGCTTGCAGGGGGCATATGCAAACCAACAGGTGGGGCAAAGTGGATCTGGGAGAGGACAGCATGGTGTTGGGCAGTATGGTGGCGTTGCCCCCTACATGGGGCACTA 1454 0.4663 MVRKRKLEPISTTESVEPPLKQQQQQQIEAQEETQLELEGQENGAEYEEVEEEVEEEVEEEEEEDPEEDDGDIAQNANDQTYKAPSTSSAATSTADEGDEDDEPIQKLLEPFSKDQIVNLLREAADKHRDVADLIRKVADEDPVHRKIFVHGLGWDTTAETLINVFKQYGEIEDCKAVCDKISGKSKGYGFILFRTRRGALNALKQPQKKIGNRMTACQLASVGPVQQPTTAQPAPAPPLSEYTQRKIYVSNVGADLDPQKLLVFFSKYGEIEEGPLGLDKMTGKPKGFCLFVYKSFEGAKKALEEPHKEFEGHLLHCQKAIDGPKPGKGQHQQHQNPHRPQFQRNENPSFAGGAAAGPGHLMAPTGPGIAFNQGPAAAQTLNPALGQALTALLASQGAGLGLTNLLGTLGSAAAVNPGVPAAGHGVQGGYGNQQNISPGVIGGYANQGGLQGAYANQQVGQSGSGRGQHGVGQYGGVAPYMGH 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02580 484 MobiDBLite consensus disorder prediction 15 38 - -
Bva13g02580 484 CDD RRM_RBM24_RBM38_like 246 321 - -
Bva13g02580 484 Coils Coil 21 41 - -
Bva13g02580 484 MobiDBLite consensus disorder prediction 42 74 - -
Bva13g02580 484 MobiDBLite consensus disorder prediction 330 349 - -
Bva13g02580 484 SMART rrm1_1 147 219 IPR000504 GO:0003723
Bva13g02580 484 SMART rrm1_1 247 319 IPR000504 GO:0003723
Bva13g02580 484 CDD RRM_RBM24_RBM38_like 146 221 - -
Bva13g02580 484 PANTHER GEO13361P1-RELATED 25 484 - -
Bva13g02580 484 Gene3D - 21 227 IPR012677 -
Bva13g02580 484 MobiDBLite consensus disorder prediction 1 102 - -
Bva13g02580 484 SUPERFAMILY RNA-binding domain, RBD 228 347 IPR035979 GO:0003676
Bva13g02580 484 Coils Coil 44 64 - -
Bva13g02580 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 248 316 IPR000504 GO:0003723
Bva13g02580 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 214 IPR000504 GO:0003723
Bva13g02580 484 PANTHER - 25 484 - -
Bva13g02580 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 322 IPR000504 GO:0003723
Bva13g02580 484 MobiDBLite consensus disorder prediction 320 362 - -
Bva13g02580 484 SUPERFAMILY RNA-binding domain, RBD 145 229 IPR035979 GO:0003676
Bva13g02580 484 Gene3D - 228 356 IPR012677 -
Bva13g02580 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 223 IPR000504 GO:0003723
Bva13g02580 484 MobiDBLite consensus disorder prediction 75 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02580 Bva-Chr13 19242558 19247061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02580 245 363 C2H2 Transcription Factor Family AT2G19380 35.246 5.17e-12 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02580 13 19242558 19247061 Bva13g02580 13 19242558 19247061 ECH