Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02578 ATGGATTTCGCAAAGGTTCCACCAAAAGAGGGATGCACTTCCCAACTGGCAAAGAGAAGAGTGAGGATAAACCTTGAACCAATGCCCAGAAGGGGCACTGGATCTAAAGGAAAGCTAATCTCACTTCTAACTAATCATTTTAAAGTTGAAACCAGCAATTTGTCTGGCCATTTCTATTGCTACAATGTTCAGATATTACATGAAGATGGTTACCCAGTTAATAAAAAagcaattaaaagaagaataattgaTGGGATTAATGGGACTTATGCTACTGAGCTTGCTGGAAACCATTTTGCTTATGACGGGAATGAGAAGCTGTACACTGTTGGATCCCTCCCTCATAAGAAAATGGAGTTCTTCATGGTGCTGGACAATGTTTCAGCAAAGAGAGTTGAACGAAATGGCAATTTCGTTGAGGGGGAAGATCCTGAAAGGTGTAGTAGGAAGAGGCTGAAGCATGCTTCCAAGAGCCgcaatttcaaaattgaaataagtCTCTCCAAAAAAATCCCAATCCACACCATTGCATATGCCCAAAATTGGCAAGAATCAGGAAACTTTGATGAAGCTTTGGCTGTGCTGAACACCATTTTAAGGCATAATGCGGCAAGAAAAGGCTGCCTTCTGCTTGGAAAACTATTCTTTGAGAATGAGCCTAGGAACTTCACAAACTTGGGAGGTGGTTTATTTGGATGCAGGAGATTTTATTCAAGTTTTCAAGCCACCCAAAGAGGATTATCTCTAAATTTTGGTGTGTCCAACACTACAATTATACAACCTGGGCCGGTAGTTGACTTTGTTCTTGCCAACCAAAATGTGAGAGATTGCCATCAAATTGATTGGAATAAgGCAAAGCGAACActgaaaaacttgaaaataaaagtggtAACCTCTCATTTAGAACACAGAATTACTGGTTTGAGTGAGAAATCCTGCAAACAACAGAGGTTCTTGCTCAATAAAAAGGACGATAACCATGCTACCCAGATCACAGTCTACGATTACTTTATAGAACATCATAATATAGTGCCAGAGAAATCTGCAGAGTTACCATGCATCAATGTGGGTAATCCAAAGAAGGCAACCTATTACCCTCTAGAGCTTTGTTCACTGCTTCCTTTGCAAAGATATACAAAGCAACTGTCTCCTCAACAAATACGTTCAATGATTGAAAAATCAAGCCTAAAGCCCCGTCAAATGATAGAAGCCATAACAGATgCAATGAAGAGCAACAAATATAACCATGACCCACTTATTCATTCTTGCGGCATAACTATCAACAAGCACTTTACTCGGGTGGAAGGTCGTGTCCTGCCAGCTCCAAGGCTAAGAATTGGAGATGGGAAAGAACTCATTCCCCAAAATGGGAGGTGGAGCTATTCCAATAAGAAACTCTTTAAACCTGCTAAAATCAAACACTGGGCAGTAGTAAACTTCTCCTCTGGCTTCAAAATTAGTTATCTGTGTGAACATCTAAGAAAAGTGGGACAAATGAGAGGAATGGCCATAGATTCCCCCAAAGTggttttggaagaaaattgtGAGTTCAAAAACGCACCACCTTTTGTTCGAGTAGAGAAGATGTATGAACAATATACTAAATTTTCCAGCAAAGAACCTGATTACTTTATTCTGTGTCTACTCCCTCAAAGGATGAGCAAAGATTTATATGGTCtatggaaaagaaagaccCTTGAACACGGAATTTTCAACCAATGCTTAACCAATCTAAAAGTCTGCGAGCAAACTCTTGCAAATGTTCTTTTAAAGATTAATGCAAAATTAGGAGGCTTAAATTCATTATTAGTCATAGAGAACATTCCTATAGTTTCTAAGGTTCCtacaataatttttgggatgAGCTTGTCAAACAACTCCCCTCACCGGGAATCGGTTGCTTCAGTAGTGGCTTCTAGGCAATGGCCTCTGGTTTCATGTTACAAAGCATCTGCTCGCATACAGCAACCAAGCTCAAAACTCATTGATACCCTTTTTATGCCAGTAACAGAAGAGAAGGATAATGGCATAGTCAGGGAGTTACTGATAGACTTCTATGCAGCATCTGCAAAGAGGAAACCTGAACAGATAATCATATTCAGAGGCGGTGCCTGTGAATCACAGTTCAATCAAGTATTGAACACTGAGCTAGGACAATTTATTGAGGCCTGCAGATGCCTTGACCAAAGTTGGTCTCCAAAGGTGACCATGATAGCTTCATCAAGAACAAATCACACAAGGTTTTTTCTGCCTAACTCTCCAGAAAACGTTCCTCCAGGAATTGTTGTTGACAACAGAGTCTCTCACCCACATAACTACGATTTCTACATATGTCCCCATTCAGCAATAAAAGGAACAACAAGACCAGTTCATTACCATGTTTTATTGGATGAGATAGGCTTTCCAGTTGATGAACTGCAGAAGCTTGTACATTCCTTGTCTTACGAGTGTCAAAGAGCCTATACTGTAATTTCTGAAGTGGCTCCTTTGCGATATGCTCGTTTGGTGACTGCCCACATGTTAGAACTGATGGCATTTTCTGACACGGCAAATGCATCAAACTATGGATGTTCAACTTCTTCTGCGTGCTCTACTCTTCCTAAGTTGCATGACAACGTGCGTAATTCCATGTTCTTTTGCTG 2642 0.3883 MDFAKVPPKEGCTSQLAKRRVRINLEPMPRRGTGSKGKLISLLTNHFKVETSNLSGHFYCYNVQILHEDGYPVNKKAIKRRIIDGINGTYATELAGNHFAYDGNEKLYTVGSLPHKKMEFFMVLDNVSAKRVERNGNFVEGEDPERCSRKRLKHASKSRNFKIEISLSKKIPIHTIAYAQNWQESGNFDEALAVLNTILRHNAARKGCLLLGKLFFENEPRNFTNLGGGLFGCRRFYSSFQATQRGLSLNFGVSNTTIIQPGPVVDFVLANQNVRDCHQIDWNKAKRTLKNLKIKVVTSHLEHRITGLSEKSCKQQRFLLNKKDDNHATQITVYDYFIEHHNIVPEKSAELPCINVGNPKKATYYPLELCSLLPLQRYTKQLSPQQIRSMIEKSSLKPRQMIEAITDAMKSNKYNHDPLIHSCGITINKHFTRVEGRVLPAPRLRIGDGKELIPQNGRWSYSNKKLFKPAKIKHWAVVNFSSGFKISYLCEHLRKVGQMRGMAIDSPKVVLEENCEFKNAPPFVRVEKMYEQYTKFSSKEPDYFILCLLPQRMSKDLYGLWKRKTLEHGIFNQCLTNLKVCEQTLANVLLKINAKLGGLNSLLVIENIPIVSKVPTIIFGMSLSNNSPHRESVASVVASRQWPLVSCYKASARIQQPSSKLIDTLFMPVTEEKDNGIVRELLIDFYAASAKRKPEQIIIFRGGACESQFNQVLNTELGQFIEACRCLDQSWSPKVTMIASSRTNHTRFFLPNSPENVPPGIVVDNRVSHPHNYDFYICPHSAIKGTTRPVHYHVLLDEIGFPVDELQKLVHSLSYECQRAYTVISEVAPLRYARLVTAHMLELMAFSDTANASNYGCSTSSACSTLPKLHDNVRNSMFFC 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02578 880 Gene3D paz domain 255 378 - -
Bva13g02578 880 Gene3D - 438 604 - -
Bva13g02578 880 Gene3D - 607 880 IPR036397 GO:0003676
Bva13g02578 880 Pfam Piwi domain 544 842 IPR003165 GO:0003676
Bva13g02578 880 Pfam N-terminal domain of argonaute 40 199 IPR032474 -
Bva13g02578 880 CDD PAZ_argonaute_like 261 373 - -
Bva13g02578 880 Pfam Argonaute linker 2 domain 403 445 IPR032472 -
Bva13g02578 880 Pfam Argonaute linker 1 domain 212 259 IPR014811 -
Bva13g02578 880 ProSiteProfiles PAZ domain profile. 303 374 IPR003100 GO:0005515
Bva13g02578 880 ProSiteProfiles Piwi domain profile. 544 845 IPR003165 GO:0003676
Bva13g02578 880 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 19 879 - -
Bva13g02578 880 SUPERFAMILY Ribonuclease H-like 533 839 IPR012337 -
Bva13g02578 880 Pfam PAZ domain 266 388 IPR003100 GO:0005515
Bva13g02578 880 SUPERFAMILY PAZ domain 256 415 IPR036085 GO:0005515
Bva13g02578 880 SMART Piwi_a_2 544 845 IPR003165 GO:0003676
Bva13g02578 880 SMART DUF1785_2 209 261 IPR014811 -
Bva13g02578 880 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 19 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02578 Bva-Chr13 19229814 19234923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02578 21 880 Eukaryotic Initiation Factors Gene Family AT5G43810 32.857 1.11e-129 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02578 K11593 - vvi:100260151 959.903