Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02555 ATGGAACAAGAACGCCTTTTGCAGAGTGGTGCTCTAAGCCGTACTCATCCAAGTGATCCCATGCTTCGCGGACCCACAATACACACCACTTTTACTCTCCCCTTAACGCGCTACACCACCCGTCTTATCGCAGCCGAGCACCACCGGATTTTCCTCGGAGACTGCACGGAGAACCGATCGGAGGACGATGATGACCGGGCCATTGAGGACATCACTTGCTCCTATTCCAAACCCATTTTGGTTCTCGACCTTGTGTGGAACCTAGCCTTTGTTCTCGTCGTTGCTGGGGTGCTTCTTTCTACATTGAACGAGCGCCCATCGACCCCTTTGAGGCTTTGGCTTTGTGGGTACGCTTATGTGTGTATTCTGCATATGGGTTTTGTGTATTTTGAGTATCGGAGGAGGACCAACGATTATCACGCAGCTGAGATGGGGCTTTCTTCCTCTCAGAGGTGGAACAGCATTTTGAAGAAGTTAGAATCTATGAACACTCTGGCATCATCTGTTTGGTGGGTCTTTGGATTTTATTGGATTGTTATGGGTGGTCAAGCCCTTTTGCAAGATTGTCCTCGTCTCTACTGGTTAACGGTGGTCTTTCTAGCCTTTGATGTatttttcatcatcttctgcATTGGGATGGCatgcataattttctttgctcTCTTCTGCTTTGTCCCAATAGTAGCATTAGCTTATGCtataaaaatgagagaaggTGCATCAGACGAGGATATCAGATCTCTTCCTAAATATAGGTTTAGTCAATCAAATTTGTTGGTGAGAGTTGATGAGGACCAGAAGCAAGTTGTTAAGGCAAGAATAGATCCAGGCAATAGTAACTATCTCAGTGAACTTTCTCTTCATCCTGATGATTCTGAATGCTGCATCTGCCTTTCTCCATATGTAGATGGAGCAGAACTGTATCGCCTTCCCTGCACACACCACTTTCATTGTGGATGCATCAGCAGATGGCTTCGGACTAAAGCAACTTGCCCCCTCTGCAAATTTGATATCCTCAGAGATGATTCATTAGTTTG 1037 0.4397 MEQERLLQSGALSRTHPSDPMLRGPTIHTTFTLPLTRYTTRLIAAEHHRIFLGDCTENRSEDDDDRAIEDITCSYSKPILVLDLVWNLAFVLVVAGVLLSTLNERPSTPLRLWLCGYAYVCILHMGFVYFEYRRRTNDYHAAEMGLSSSQRWNSILKKLESMNTLASSVWWVFGFYWIVMGGQALLQDCPRLYWLTVVFLAFDVFFIIFCIGMACIIFFALFCFVPIVALAYAIKMREGASDEDIRSLPKYRFSQSNLLVRVDEDQKQVVKARIDPGNSNYLSELSLHPDDSECCICLSPYVDGAELYRLPCTHHFHCGCISRWLRTKATCPLCKFDILRDDSLV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02555 345 PANTHER RING-FINGER UBIQUITIN LIGASE 23 345 - -
Bva13g02555 345 CDD RING-H2_RNF111_like 293 337 - -
Bva13g02555 345 Pfam Ring finger domain 293 335 IPR001841 -
Bva13g02555 345 MobiDBLite consensus disorder prediction 1 15 - -
Bva13g02555 345 PANTHER TARGET OF ERK KINASE MPK-1 23 345 - -
Bva13g02555 345 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Bva13g02555 345 SUPERFAMILY RING/U-box 287 340 - -
Bva13g02555 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 343 IPR013083 -
Bva13g02555 345 MobiDBLite consensus disorder prediction 1 23 - -
Bva13g02555 345 SMART ring_2 294 334 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02555 Bva-Chr13 19132014 19135925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02555 13 342 C3H Transcription Factor Family AT1G68070 42.899 4.26e-91 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02555 - - ahf:112696795 480.33