Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva13g02549 | ATGGCATCTGATCCATGGCTGCGAGAATTTAATGAAGCATCAAAATTATCAGAAGAAGTGAAGGGTATGATTTCTGCAAGGAGTTCACTGCCTCCTTCTGGGCCAGAAACACAGCGTCATCTATCAGCTGCTAGGAGAAAGATAACTATATTAAGGACCAAACTTGAAACTCTTCAGTCACTTCTGTCAACACTTCCGAGCAAGCAGCCGATAACAGGAAAAGAGATGAATCGACGCCAAGACTTGCTCACTAATTTAAGTTCCAAAACCAACCAGATGGCTACTTCTCTCAACATGTCTGGTTTTGCTAATAGAGATAGCTTGCTTGGACCTGATAAAAAGTCTGAAGAAGTCATGAACAAAGCATCTGCCTTGGACAACCAGGGTCTTGTTGGCTTTCAAAGGCAAATCATAAAAGAACAAGATGAAGATTTTGAAAAGTTAGAGGAGACAGTTATAAGCACAAAACATATCGCATTGGCAGTTAATGAGGAACTTGGCCTACAAACTAGACTTCTGGATAGTATGGACCAGCATGTGGATTCAACAAATTCTCGCCTACAGATGGTACAAAAGAGATTGGCCATACTGAACAAGCGCACTAAAGGTGGTTGTTCTTGTATGATTCTGCTAATCCTTGCTTTCGTCGCCCTGATAGTTGTCGCATGGTTACTGGTTAAATATTTGTA | 689 | 0.4122 | MASDPWLREFNEASKLSEEVKGMISARSSLPPSGPETQRHLSAARRKITILRTKLETLQSLLSTLPSKQPITGKEMNRRQDLLTNLSSKTNQMATSLNMSGFANRDSLLGPDKKSEEVMNKASALDNQGLVGFQRQIIKEQDEDFEKLEETVISTKHIALAVNEELGLQTRLLDSMDQHVDSTNSRLQMVQKRLAILNKRTKGGCSCMILLILAFVALIVVAWLLVKYL | 229 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva13g02549 | 229 | SUPERFAMILY | SNARE fusion complex | 126 | 197 | - | - | |
| Bva13g02549 | 229 | Coils | Coil | 41 | 61 | - | - | |
| Bva13g02549 | 229 | CDD | SNARE_Qc | 138 | 195 | - | - | |
| Bva13g02549 | 229 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 224 | - | - | |
| Bva13g02549 | 229 | Coils | Coil | 180 | 200 | - | - | |
| Bva13g02549 | 229 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 135 | 197 | IPR000727 | - | |
| Bva13g02549 | 229 | Pfam | SNARE domain | 172 | 221 | IPR000727 | - | |
| Bva13g02549 | 229 | SMART | tSNARE_6 | 130 | 197 | IPR000727 | - | |
| Bva13g02549 | 229 | Gene3D | - | 137 | 199 | - | - | |
| Bva13g02549 | 229 | PANTHER | SYNTAXIN | 1 | 224 | IPR045242 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva13g02549 | Bva-Chr13 | 19089231 | 19092743 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva13g02549 | 2 | 229 | SNARE and Associated Proteins | AT1G79590 | 61.739 | 3.40e-102 | 295 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva13g02549 | K08503 | - | nnu:104589757 | 330.487 |