Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02546 atgtCAAGTCGCAGAAACACCCATTGGTGTTATAGTTGTAGGAGGCCATTTCGTCTGCGAGGGCAAGATGTGGTTTGCCCAAGCTGTAATGGGGGATTTGTTCAAGAACTTAATGACATGGTGCACATAAGTCCACTGGAATTCTTTGGACTGGACAATAATGAAGAACGGGACCAACGGGTTGGATTTATGGAAGCCTTCTCGGCCTTTATGAGGCATCGATTGGCAGATAGAAGCAGTAACCATGATATCAGGGCGAGATCAGATTCAGTTCCTGAACATAGTCCAGGATTTGCTCCTTTATTGATCTTTGGTGGTCAGATTCCATTTAGATTGTCCGGACATGGTGGCTTTGAAGCCTTATTTAATGGTGCTCCTGGAATTGGTCTCACACGAGGTAATACAGgtgattattttattggtCCTGGTCTGGAGGAACTGTTTGAACAGCTTTCAGCCAATGACCGGCGGGGTCCTCCGCCAGCTTCCAGTTCTTCAATAGATGCAATGCCCACTATTAAGATCACACAGAGGCATCTCCGTTCAGATTCGCATTGTCCAGTATGCAAGGATAAATTTGAGCTGGGGTCTGAAGCAAGGCAAATGCCATGTAATCATATTTATCATTCAGATTGTATTGTCCCATGGTTGGTGCAGCACAACTCATGCCCTGTTTGCCGCCAGGAGTTGCCACCACAAGGATTGAGTAGTAATCGTGGCTCAAATGGGAGAAGTAGAAGCAGTCATAGTAGCAATTCTAGTGGTAGGGTAAACGGCAGGGAAAGCCAGGGAAGGCGGaatccattttcttatttatggCCTTTCCGTTCATCTAATCCTAGCACTAATGGAGGCGCTGGAAGCAGCTCACCAACGCCTTCGATCCCTGAGAACAACCATCAAACGGGATATTCTGGGTGGCCATTTGACTG 932 0.4539 MSSRRNTHWCYSCRRPFRLRGQDVVCPSCNGGFVQELNDMVHISPLEFFGLDNNEERDQRVGFMEAFSAFMRHRLADRSSNHDIRARSDSVPEHSPGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANDRRGPPPASSSSIDAMPTIKITQRHLRSDSHCPVCKDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGSNGRSRSSHSSNSSGRVNGRESQGRRNPFSYLWPFRSSNPSTNGGAGSSSPTPSIPENNHQTGYSGWPFD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02546 310 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Bva13g02546 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Bva13g02546 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 307 - -
Bva13g02546 310 MobiDBLite consensus disorder prediction 272 310 - -
Bva13g02546 310 MobiDBLite consensus disorder prediction 234 265 - -
Bva13g02546 310 CDD RING-H2_RNF126_like 186 227 - -
Bva13g02546 310 Pfam Ring finger domain 185 227 IPR001841 -
Bva13g02546 310 SMART ring_2 186 226 IPR001841 -
Bva13g02546 310 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Bva13g02546 310 MobiDBLite consensus disorder prediction 234 310 - -
Bva13g02546 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 307 - -
Bva13g02546 310 SUPERFAMILY RING/U-box 166 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02546 Bva-Chr13 19070212 19073010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02546 121 231 C3H Transcription Factor Family AT5G01980 44.348 5.75e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02546 K11982 - qsu:112031639 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02546 13 19070212 19073010 Bva13g02546 13 19070212 19073010 ECH