Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02527 ATGTCGTCAGAAAAGCCAATTCAAGGAGATTTACCCAACGGGAAATTTAAACATATGGGTGATAATGCTGGCTTACGAGATTATGTTCCTAAATTGGGTGGTTTATCTAAAGAATACTTGGATTTAAAGGATATAATTTCATCCTCGGTAAAAGATGCTTTATCAAGTTTTGGTTTACGAACCACAAAAGGAGTCCTTCTTCATGGCCCGCCTGGAACAGGAAAGACTTCCTTGGCTCAATTATGTGTTCACGATGTAGGGGTCAATCTTTTCCCTGTAAACGGACCTGAAATTGTGAGACAATATTATGGTGAAAGTGAGCAAGCACTGCATGAAGTTTTTGACTCAGCCATTCAAGCTGCACCTGCTGTGGTATTCATCGATGAGCTGGATGCCATTGCCCCCGCAAGGAAAGATGGAGGTGAAGAGCTGTCTCAAAGAATGGTTGCCACCTTATTGAATCTGATGGATGGGATTAGCAGAACTGAAGGACTGCTTGTAATTGCAGCCACCAACAGGCCAGACAATATTGAGCCTGCTCTCAGAAGGCCTGGAAGATTTGACAGGGAAATTGAAATTGGAGTGCCATCACCCAACCAACGATTGGACATTTTGCGCACTCTTCTCAGTGAAATGGATCACTCTCTTTCAGTGTTACAAATTGAACACCTTGCCACAGTGACACATGGTTTTGTTGGTGCTGATCTAGCTGCCCTTTGTAATGAGGCAGCCTTGGTTTGTCTCAGACGTTATGCTAAGTTTAAGAAGGCTACTGATGCGTCCTGTCATAAAGGAACATCCATTCCATACAGAGGCTGTTCTGATAATATAACAGAGAAACCTTCTCCGCTGAAAGGTGTGACAATCTCAAGAGATAATTTAGATGATGCATTTTCATCTGTCTCAGATTTGCCAATGGCCTCTGCCCTTGTAACACCTTGCATGATGGGAGCAACTTctgaaaatatggaaattATTTCTGATAATGGTGAAGAAGAGCATTTGTTGAAAGtggattttgaagattttcaGAAAGCAAGGATGAAAATAAGACCCAGTGCCATGAGAGAGGTTATCCTGGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGTGGCCAAAAGGAGGTCAAAGCCCAATTGATGGAAGCTGTAGAATGGCCACAGAAATACCATGATGCATTCAAGCGTATTGGGACTCACCCTCCAACGGGGGTATTGATGTTTGGACCTCCAGGTTGTAGCAAAACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGCTGAATTTTCTGGCTGTCAAGGGTCCAGAACTCTTCAGCAAATGGGTTGGAGAATCTGAGAAGGCTGTCAGATCACTGTTTGCAAAAGCAAGGGCCAATGCCCCAtcgattatattttttgatgaaatagATGGTCTTGCTGTCACTCGTGGGAAGGAAAATGATGGCGTTTCGGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAATTGGATGGTCTGCATCAAAGAGTTAACGTCACTGTCATTGCTGCAACAAATAGACCAGACAAGATAGATCCTGCCCTTTTAAGACCAGGCCGCTTTGACCGTCTACTTTATGTGGGACCTCCAAATGAGATAGACCGAGAAGATATATTTTCTATCCATTTGCGTAAAATTCCATGTGATTCCGATGTTAGCACGAAAGAACTGGCTCGTCTCACGGATGGTTGTACTGGGGCTGATATATCACTAATATGTCGGGAGGCAGCTGTTGCAGCTATAGAGGAGAACCTTAACGCTTCAGTAATTACAATGAAGCATTTGAAAACAGCAATTAAACAGGTCCAGCCATCAGAGATCCAGTCTTACCAACAGCTgtcaacaaaatttcaaagggCCGTTCACTCTTCTGATACAAAAGATGAATGCATTTCTGCTCAATGTTCAAGTAGATATACTTGGTTCCCCATTTGGAATTTCATCAAATCTTTCACAACATACCTCTTTCAGTTTCCAGCAGCCCTTTCTTATTTGAAGACTGGTCCCAGTGGGTA 2039 0.4203 MSSEKPIQGDLPNGKFKHMGDNAGLRDYVPKLGGLSKEYLDLKDIISSSVKDALSSFGLRTTKGVLLHGPPGTGKTSLAQLCVHDVGVNLFPVNGPEIVRQYYGESEQALHEVFDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGISRTEGLLVIAATNRPDNIEPALRRPGRFDREIEIGVPSPNQRLDILRTLLSEMDHSLSVLQIEHLATVTHGFVGADLAALCNEAALVCLRRYAKFKKATDASCHKGTSIPYRGCSDNITEKPSPLKGVTISRDNLDDAFSSVSDLPMASALVTPCMMGATSENMEIISDNGEEEHLLKVDFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKYHDAFKRIGTHPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVTRGKENDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEIDREDIFSIHLRKIPCDSDVSTKELARLTDGCTGADISLICREAAVAAIEENLNASVITMKHLKTAIKQVQPSEIQSYQQLSTKFQRAVHSSDTKDECISAQCSSRYTWFPIWNFIKSFTTYLFQFPAALSYLKTGPSG 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02527 679 Pfam ATPase family associated with various cellular activities (AAA) 405 536 IPR003959 GO:0005524|GO:0016887
Bva13g02527 679 Pfam ATPase family associated with various cellular activities (AAA) 65 194 IPR003959 GO:0005524|GO:0016887
Bva13g02527 679 CDD AAA 371 537 - -
Bva13g02527 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 614 IPR027417 -
Bva13g02527 679 CDD AAA 59 194 - -
Bva13g02527 679 Gene3D - 26 196 IPR027417 -
Bva13g02527 679 ProSitePatterns AAA-protein family signature. 507 525 IPR003960 GO:0005524|GO:0016887
Bva13g02527 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 254 IPR027417 -
Bva13g02527 679 PANTHER - 30 635 - -
Bva13g02527 679 Gene3D - 197 365 - -
Bva13g02527 679 SMART AAA_5 401 539 IPR003593 -
Bva13g02527 679 SMART AAA_5 61 197 IPR003593 -
Bva13g02527 679 Gene3D - 538 623 - -
Bva13g02527 679 PANTHER AAA-FAMILY ATPASE 30 635 - -
Bva13g02527 679 Gene3D - 366 624 IPR027417 -
Bva13g02527 679 Pfam AAA+ lid domain 559 604 IPR041569 -
Bva13g02527 679 Pfam AAA+ lid domain 221 252 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02527 Bva-Chr13 18955089 18960883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02527 20 652 Calmodulin-binding Proteins AT3G56690 67.284 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02527 - - gmx:100788600 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02527 13 18955089 18960883 Bva13g02527 13 18955089 18960883 ECH