Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02522 ATGGCCACGAAGTCTGGGTCACTAGATTATTGGAGAAGTTATTTTCGAACTGTAAattgtgaaatatttgatataattgaGCATGCGATCATGGTGGCTGCTTCTGATTGTCCTAAAGAGTTCAGATTGCGTAGAGATCGTATTGCAGAGAAGTTGTATTCTTGTAGATTGAATCGTTGTATAGGGTGTGAGCGAGTAGAGTTGGCGGCGCCTGTTGATGAGGAGGAAGATGGAGGTTGCAAGAGTGGTTTTGATAGGGATGGCGCTGAATTTGAAGAAGGGGCAAGTAAAGAGAGCAAAGTCAATAGTAGTAGAGATGACCATGGGGAGATGAACATGAATCAAGTTAGCAATTATAGCTATGGAGAAGCTGAGGCATTGACCGATGAGATTGAAGAAGAGTCTCAAATTGTTGAGGAGGTTTATAGGATCAAAGAGATTCTCAAAAACAGCGAAGAAGAGTCTGATTCAGTGTTATTCGAGTCATTGAGAAGGCTCCAGTTGATGGCACTAACTGTGGATCTTCTAAAGGCAACTGAGATTGGAAAGGTCGTCAATCCTCTGAGAAAACATGGATCAAAGGACATTCGCCAACTTGCTCGAACTCTTATTGATGGCTGGAAAGAAATGGTAGATGTGTGGGTCAAGACTACAGCGGCTGTTGCAGgtTCAGAAGGTACCCCAGATTCTGTAAATCCATCCGTTGTGGATGAAGAGGAAGGGCTTCCATCACCTCCTCTTGATGATATGGCTTTCATTCAAACTGGTTCCATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACAGAGTGGGGAATTCATCAAGAACCATGAAAACAGCAGAAAACCATCTCTGGATGTGCAAAACACAGCATGGAGAAAACCGCAAACTTCCGATGAGGCAAACTTCATTGCCAAGGACACTAAGAGTCAGCAATTAAAGAAAACCGATGCTGTTGTGAAGCCAAACAAACCAGTAACTGCTGATTCTGGCCCTGGCAGACCACCAAAATCAAGCTTGCAGCAAAAAATAGAGAAGGGGACTATCCCAAAGAGGCCTATTGCTAGCCAGCGAGATAAATTAAAGAGTTCAGATGATGCTGCAAAACTGGAAGCCACAAAGAGGAAACTTCAGGAGCGCTATCAGCAAGCTGAAAATGCTAAGAGGCAGAGGACAATACAGGTTATGGAGTTGCATGATCTCCCCAAGCAAGGGATTGCTCACAGAAATCTACATGTCAAACCCGGGAACCACAACAGGCATTGGGCCAACGGAAGAAGATA 1301 0.4358 MATKSGSLDYWRSYFRTVNCEIFDIIEHAIMVAASDCPKEFRLRRDRIAEKLYSCRLNRCIGCERVELAAPVDEEEDGGCKSGFDRDGAEFEEGASKESKVNSSRDDHGEMNMNQVSNYSYGEAEALTDEIEEESQIVEEVYRIKEILKNSEEESDSVLFESLRRLQLMALTVDLLKATEIGKVVNPLRKHGSKDIRQLARTLIDGWKEMVDVWVKTTAAVAGSEGTPDSVNPSVVDEEEGLPSPPLDDMAFIQTGSMELSQFFDGMDDDGNPRQSGEFIKNHENSRKPSLDVQNTAWRKPQTSDEANFIAKDTKSQQLKKTDAVVKPNKPVTADSGPGRPPKSSLQQKIEKGTIPKRPIASQRDKLKSSDDAAKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQGIAHRNLHVKPGNHNRHWANGRR 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02522 433 MobiDBLite consensus disorder prediction 289 315 - -
Bva13g02522 433 MobiDBLite consensus disorder prediction 271 288 - -
Bva13g02522 433 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 432 - -
Bva13g02522 433 ProSiteProfiles TFIIS N-terminal domain profile. 139 214 IPR017923 -
Bva13g02522 433 MobiDBLite consensus disorder prediction 262 374 - -
Bva13g02522 433 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 432 IPR044805 -
Bva13g02522 433 MobiDBLite consensus disorder prediction 358 374 - -
Bva13g02522 433 MobiDBLite consensus disorder prediction 91 107 - -
Bva13g02522 433 SMART TFS2_5 138 213 IPR003617 GO:0005634
Bva13g02522 433 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 224 IPR035441 -
Bva13g02522 433 MobiDBLite consensus disorder prediction 91 113 - -
Bva13g02522 433 MobiDBLite consensus disorder prediction 223 246 - -
Bva13g02522 433 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 223 IPR035441 -
Bva13g02522 433 Coils Coil 366 400 - -
Bva13g02522 433 Pfam TFIIS helical bundle-like domain 163 211 IPR017923 -
Bva13g02522 433 CDD TFIIS_I 139 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02522 Bva-Chr13 18922637 18926337 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Bva13g02522 Med26 9.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02522 - - gmx:100775579 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02084 04 20400901 20404978 Bva13g02522 13 18922637 18926337 BWGD
Bva13g02522 13 18922637 18926337 Bva13g02522 13 18922637 18926337 ECH