Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02521 ATGAGAGGATACCCATCCAACGTCATGAccatggaagaagaagacTCTATGTTACTAATGGACCCAGAGGACCAATCCTCTCAAAGTTCACAGGTGCAATCGCAATCCGAATCGTCTTTGTCCGAAAGTTACCTACTTGGCTTTGTCATTGCCGACATTGTTGGGATTAAATACTATTCGGGCACCATCACCGGCCGCGAAATGGTGGGTCTCGTCCGTGAACCTCTCAATCCCTACGACGAGAACGCCATTAAGGTGCTCAACACTAGAAGTGATCAGGTTGGGCATATTGAGCGCTCTGTCGCCGCGGTACTGTCACCTTTGATAGATATTAACCTAATTACCATTGAAGGCATTGTGCCCAATTCGCGCGCCGCTAATAACCGCTTTAGACTTCCCTGTCAAATTCACATCTTTGCAGCGATCGAGGCCTTTCCCACCGTGAAAGATGCCATTTCATATGGTGGGCTGAACCTAATTTCGAATACTGATGCATCGTTTGCGTTATCAGCGGCTATGGCtgtaaaggaaaagaaggctCCGATGAAACTTAGGAGTGTAGATGAGATTTTCAAGTTGGTTGACGAGAGTGTCAGCAAGAAGTGTGTATTTGAATCGTTGGAGCCCCCTAAAACTGTGATTAAGTCGGAGCTTTTTGTACATCAAAAGGAAGGGTTAGGGTGGTTAGTTCATAGGGAAAATTCTGGTGAACTGCCACCTTTTTGGGAAGAGAAAGATGGAGTCTATGTGAATGTGTTAACTAATTATCAGACAGATAAAAGGCCGGAGCCTTTGCGAGGTGGAATTTTTGCTGATGATATGGGATTGGGCAAGACCTTAACTTTGCTTTCTTTGGTGGCTTTCGATAAAAATCCTAGTGCTTTTACTTCTTCAATAGATATTAGGAGCGTAGATGTAGGACAACATGATGAAATGATGGAGCAGAATGAAGAATTGTCTGTCTCTGGTGGTAAGAAGGGTAAGAGGGGGAGACCGAGAAAAAATGCCACCGGGTCACTGAAAAGACGCAAGACTGATACTATTTCTTCTGGGAACCATGTCAAAGATGGGGGTGAATCTGTTGGCATTGGCATATCTTCTAGAAATATGGAAACAAAGACAACATTGGTTGTGTGCCCCCCTTCTGTATTTTCAACTTGGATAAATCAGCTCGAAGAACATACTGCACCTGGCTCGTTGATGACATACATGTATTATGGGGATAGAAGGACCAAGGATGctgaagaattgaagaaatatgATATTGTGTTAACTACATATACCACTTTAGGCGGGGAAGAACATTGGTCAAACTCACCAGTAAAGAAAGTAGAGTGGTGGAGAATCATTTTGGATGAAGCACACATAATTAAGAATGTCAATGCTCAACAAAGTCGAGCAGTCACCAATCTGATTGCTAGGCGGAGGTGGGCCGTTACTGGGACACCAATTCAAAATGGTTCGTATGATTTGTTTTCTCTAATGGCATTTTTACGTTTTGAACCATTTTCAGTAAAGAGCTATTGGCAGAGCTTGGTGCAACGTCCTCTTGGTCAGGGCGACCGCAGAGGACTCTCGCGTTTGCAGGTTTTGATGGCTACAATTTCACTGCGAAGAACAAAGGACAAGGAATTGGTAGGACTTGCACCAAAAACCTTGGAGACTTATTGTGTTGAACTTTCTGGTGAAGAACGTAAACTTTATGATCGGATGGAAGCCGAAGCAAAGAACATAGTGCAGGGCTTTATCAACAACGGAAGTCTAGTGCGCAACTACTCCACTGTACTAAGTGTAATATTACGCCTTCGGCAAATCTGTACTGATTTGGCATTGTGCCCCTCAGATCTCAAATCACTACTCCCttcaaataatattgaagATGTTTCCAATAACCCAGAATTGCTGCAAAAATTGCTTGAGGTGCTACAAGATGGTGAAGATTTTGACTGTCCGATTTGTATTTCTCCACCAACTGATATTGTCATTACATGCTGTGCTCACATTTTCTGCGAGGCctgtattttgaaaactctAGACCGCAGCAAATCCTGTTGTCCCCTCTGCCGTCGTCCTCTCTCTGAATCTGACTTGTTCTCAGCCCCACAATCATCCGAGCCAGATGGTACTGGAGCATCCTCCTGTGGAACAAGCTCGTCTTCCAAAGTATCCGCACTGATAAAACTTCTTAGTGAATCAAGGGATCAAGATCCAGGTACAAAATCAGTTGTGTTTTCACAATTTCGCAAGATGTTGTTGTTACTGGAAGAGCCTCTTAAAGCAGCTGGTTTCAAGACTTTGCGTCTTGATGGATCAATGAATGCTAAACGAAGGGCTCTAGTGATAGAAGAATTTGGAGCCACAGGAAGAGAGGGGGCCACAGTTCTGCTTGCAAGCCTTAAGGCATCAGGTGCAGGCATAAATCTCACAGCTGCTTCAAGAGTGTACTTGTTTGAGCCATGGTGGAATCCAGCAGTGGAAGAACAGGCAATGGATCGCGTCCATCGCATTGGACAGAAGCAGGAAGTGAAGATTGTTAGGTTGATTGCTCAGAACAGCATTGAAGAGAGGATATTGGAACTGcaggagaagaaaaagcaacTTGCGAAGGAAGCATTTGGAAAGAAAGGAGCAAAGGGTCGGAGGGAAGTTGGTGTGGATGATCTCCGTATCCTCATGTCCTTCTA 2684 0.4281 MRGYPSNVMTMEEEDSMLLMDPEDQSSQSSQVQSQSESSLSESYLLGFVIADIVGIKYYSGTITGREMVGLVREPLNPYDENAIKVLNTRSDQVGHIERSVAAVLSPLIDINLITIEGIVPNSRAANNRFRLPCQIHIFAAIEAFPTVKDAISYGGLNLISNTDASFALSAAMAVKEKKAPMKLRSVDEIFKLVDESVSKKCVFESLEPPKTVIKSELFVHQKEGLGWLVHRENSGELPPFWEEKDGVYVNVLTNYQTDKRPEPLRGGIFADDMGLGKTLTLLSLVAFDKNPSAFTSSIDIRSVDVGQHDEMMEQNEELSVSGGKKGKRGRPRKNATGSLKRRKTDTISSGNHVKDGGESVGIGISSRNMETKTTLVVCPPSVFSTWINQLEEHTAPGSLMTYMYYGDRRTKDAEELKKYDIVLTTYTTLGGEEHWSNSPVKKVEWWRIILDEAHIIKNVNAQQSRAVTNLIARRRWAVTGTPIQNGSYDLFSLMAFLRFEPFSVKSYWQSLVQRPLGQGDRRGLSRLQVLMATISLRRTKDKELVGLAPKTLETYCVELSGEERKLYDRMEAEAKNIVQGFINNGSLVRNYSTVLSVILRLRQICTDLALCPSDLKSLLPSNNIEDVSNNPELLQKLLEVLQDGEDFDCPICISPPTDIVITCCAHIFCEACILKTLDRSKSCCPLCRRPLSESDLFSAPQSSEPDGTGASSCGTSSSSKVSALIKLLSESRDQDPGTKSVVFSQFRKMLLLLEEPLKAAGFKTLRLDGSMNAKRRALVIEEFGATGREGATVLLASLKASGAGINLTAASRVYLFEPWWNPAVEEQAMDRVHRIGQKQEVKIVRLIAQNSIEERILELQEKKKQLAKEAFGKKGAKGRREVGVDDLRILMSF 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02521 894 Pfam SNF2-related domain 221 609 IPR000330 GO:0005524|GO:0140658
Bva13g02521 894 Pfam Zinc finger, C3HC4 type (RING finger) 647 693 - -
Bva13g02521 894 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 259 501 IPR014001 -
Bva13g02521 894 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 721 889 IPR001650 -
Bva13g02521 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 888 IPR027417 -
Bva13g02521 894 Gene3D - 550 893 IPR027417 -
Bva13g02521 894 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 706 IPR013083 -
Bva13g02521 894 Gene3D - 191 300 IPR038718 -
Bva13g02521 894 SMART HIRAN_2 46 142 IPR014905 GO:0003676|GO:0008270|GO:0016818
Bva13g02521 894 CDD SF2_C_SNF 721 848 - -
Bva13g02521 894 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 369 893 - -
Bva13g02521 894 Gene3D - 360 540 IPR038718 -
Bva13g02521 894 MobiDBLite consensus disorder prediction 314 360 - -
Bva13g02521 894 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 23 297 - -
Bva13g02521 894 ProSiteProfiles Zinc finger RING-type profile. 650 689 IPR001841 -
Bva13g02521 894 SMART ring_2 650 688 IPR001841 -
Bva13g02521 894 Coils Coil 850 870 - -
Bva13g02521 894 ProSitePatterns Zinc finger RING-type signature. 665 674 IPR017907 -
Bva13g02521 894 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 23 297 - -
Bva13g02521 894 Pfam Helicase conserved C-terminal domain 721 837 IPR001650 -
Bva13g02521 894 SMART helicmild6 752 837 IPR001650 -
Bva13g02521 894 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 369 893 - -
Bva13g02521 894 SMART ultradead3 214 508 IPR014001 -
Bva13g02521 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 539 IPR027417 -
Bva13g02521 894 Gene3D - 37 159 - -
Bva13g02521 894 SUPERFAMILY RING/U-box 635 695 - -
Bva13g02521 894 MobiDBLite consensus disorder prediction 696 718 - -
Bva13g02521 894 Pfam HIRAN domain 47 140 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02521 Bva-Chr13 18911224 18916276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02521 33 894 RAD5 or RAD16-like Gene Family AT5G05130 65.704 0.0 1137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva13g02521 SNF2_N 5e-74 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02521 K15711 - jre:108979720 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02521 13 18911224 18916276 Bva13g02521 13 18911224 18916276 ECH