Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02448 ATGGAGATTGATGAGGAAAGCACCGTACCAGTTATTTCCGCAGAATCCTCTGTCACTGCCTCTGATGGTCAAAGTCGGGTATCTCCTCTTCATGCAACTCCACCCCAACCAGTACAACCTATAATTCCACCTCCTGTTATGCCTCCCATTGCTTCAATTCCTACCATTCCTCCAGCTCCAGTTCTCCGCCCGCTTGCACCTCTTCCTGTCCGTCCACCAGTTATTAGGCCACCTGTTTCGCAAAATGGCGAGGTATCAAGTGACTCTGATTCAGACAATGATGATTCTCTTCCTGGGGTTAACCAGGGGGCTGGGGAGTACGAAATATCAGAAGAGAGTAGGTTGGTAAGAGAGAGGCAGGAAAAAGCAATGCAAGAACTCATGATGAAGAGGCGTGCTGCTGCTCTAGCTGTTCCTACAAATGACATGGCAGTGCGGGCTCGACTTCGCCGTCTTATTGAGCCCATTACACTTTTTGGTGAACGGGAGATGGAGAGAAGAGACAGGTTGCGAATGATTATGGCAAAGTTAGATGCTGAAGGTCAGCTGGAAAAGCTGATGAAAGCTCATGAGGACGAAGAGGCCGCAGCTTCTGCTCCGAAAGATGAGGTGGAGGAAGATATACAGTATCCCTTTTATACAGAAGGATCAAAGGCTCTCCTGGATGCCAGGATTCATATTGCTAAGTATTCTGTAGGAAGAGCAGCATTGCGTCTTCAACGTGCTCGGAGAAAAAGAGATGATCCAGATGAAGACGTGGATGCAGAAATGGACTGGGCTTTAAAGCAGGCTGGGAATATGTCTCTTGATATCAGTGAGATTGGAGATGATCGGCCACTTACTGGTTGCTCATTCTCACCAGATGGAAAAATGATTGCTACCTGTTCTCTTAGTGGAGCTTCCAAATTATGGAGCATGCCTCAATTGAAAAAGGTTTCTATCTTAAAGGGACATACTGAGCGTGCTACTGATGTTGCTTATTCTCCAATGCACAATCATTTAGCAACTGCCTCTGCTGATCGGACCGCAAGATATTGGCATGAAGACGGATCTCTATTGAAGACATTTGATGGTCACCTGGACCGTCTTGCACGTATTTCCTTCCATCCATCAGGAAAGTACTTGGGCACTGCTAGCTTCGACAAGACATGGAGATTATGGGACATAGAAACGGGAGAGGAGTTGCTTCTTCAAGAAGGCCACAGTAGGAGTGTCTATGCTTTAGATTTCCACATTGATGGATCATTAGCTGCATCTTGTGGACTGGATGCACTGGTTCGCGTTTGGGACCTCCGTACTGGGAGAAGCATACTTGCACTGGAAGGCCATGTTAAGCCGGTTCTTGGTATCAGTTTTTCACCCAATGGGTATCATTTAGCCACAGGTGGTGAAGATAACACTTGTCGCATTTGGgatttgaggaagaagaaatcttTGTATGTCATTCCAGCTCactcaaatttaatatcaCAAGTCAAATTTGAGCCACAAGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACAGCTaagGTTTGGTCAGCCCGTGATTTTAAGCCTGTGAAGACGCTATCTGGGCATGAAGCGAAAGTTACTTCTGTGGATGTTGTCTCAGATGGACGTTATATTGCGACTGTTTCCCATGATAGGACCATAAAGCTGTGGTCCAGCAGTGAAAAAGCTATGGAAATTGACTG 1700 0.4541 MEIDEESTVPVISAESSVTASDGQSRVSPLHATPPQPVQPIIPPPVMPPIASIPTIPPAPVLRPLAPLPVRPPVIRPPVSQNGEVSSDSDSDNDDSLPGVNQGAGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLIEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASAPKDEVEEDIQYPFYTEGSKALLDARIHIAKYSVGRAALRLQRARRKRDDPDEDVDAEMDWALKQAGNMSLDISEIGDDRPLTGCSFSPDGKMIATCSLSGASKLWSMPQLKKVSILKGHTERATDVAYSPMHNHLATASADRTARYWHEDGSLLKTFDGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYALDFHIDGSLAASCGLDALVRVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYVIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSVDVVSDGRYIATVSHDRTIKLWSSSEKAMEID 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02448 566 SMART WD40_4 518 557 IPR001680 GO:0005515
Bva13g02448 566 SMART WD40_4 475 515 IPR001680 GO:0005515
Bva13g02448 566 SMART WD40_4 349 388 IPR001680 GO:0005515
Bva13g02448 566 SMART WD40_4 308 347 IPR001680 GO:0005515
Bva13g02448 566 SMART WD40_4 266 305 IPR001680 GO:0005515
Bva13g02448 566 SMART WD40_4 391 430 IPR001680 GO:0005515
Bva13g02448 566 SMART WD40_4 433 472 IPR001680 GO:0005515
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 439 IPR001680 GO:0005515
Bva13g02448 566 SUPERFAMILY PRP4-like 123 178 IPR036285 -
Bva13g02448 566 MobiDBLite consensus disorder prediction 73 114 - -
Bva13g02448 566 ProSitePatterns Trp-Asp (WD) repeats signature. 459 473 IPR019775 -
Bva13g02448 566 Gene3D - 254 439 IPR015943 GO:0005515
Bva13g02448 566 MobiDBLite consensus disorder prediction 1 43 - -
Bva13g02448 566 SUPERFAMILY WD40 repeat-like 273 556 IPR036322 GO:0005515
Bva13g02448 566 CDD WD40 279 557 - -
Bva13g02448 566 PANTHER BNAC04G01920D PROTEIN 104 561 - -
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 515 - -
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 435 - -
Bva13g02448 566 MobiDBLite consensus disorder prediction 80 98 - -
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 525 557 IPR001680 GO:0005515
Bva13g02448 566 Pfam WD domain, G-beta repeat 310 346 IPR001680 GO:0005515
Bva13g02448 566 Pfam WD domain, G-beta repeat 350 388 IPR001680 GO:0005515
Bva13g02448 566 Pfam WD domain, G-beta repeat 520 557 IPR001680 GO:0005515
Bva13g02448 566 Pfam WD domain, G-beta repeat 399 430 IPR001680 GO:0005515
Bva13g02448 566 Pfam WD domain, G-beta repeat 280 305 IPR001680 GO:0005515
Bva13g02448 566 Pfam WD domain, G-beta repeat 438 472 IPR001680 GO:0005515
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 481 IPR001680 GO:0005515
Bva13g02448 566 Gene3D - 440 564 IPR015943 GO:0005515
Bva13g02448 566 MobiDBLite consensus disorder prediction 10 32 - -
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 440 474 - -
Bva13g02448 566 PANTHER WD40 REPEAT PROTEIN 104 561 - -
Bva13g02448 566 SMART pr04_2 140 193 IPR014906 -
Bva13g02448 566 Coils Coil 176 196 - -
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 525 566 - -
Bva13g02448 566 ProSitePatterns Trp-Asp (WD) repeats signature. 375 389 IPR019775 -
Bva13g02448 566 Gene3D - 116 186 IPR036285 -
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 346 IPR001680 GO:0005515
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 393 - -
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 346 - -
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 397 IPR001680 GO:0005515
Bva13g02448 566 ProSitePatterns Trp-Asp (WD) repeats signature. 417 431 IPR019775 -
Bva13g02448 566 PRINTS G protein beta WD-40 repeat signature 375 389 IPR020472 -
Bva13g02448 566 PRINTS G protein beta WD-40 repeat signature 459 473 IPR020472 -
Bva13g02448 566 PRINTS G protein beta WD-40 repeat signature 544 558 IPR020472 -
Bva13g02448 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 524 IPR001680 GO:0005515
Bva13g02448 566 Pfam pre-mRNA processing factor 4 (PRP4) like 145 171 IPR014906 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02448 Bva-Chr13 18482840 18487297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02448 360 556 U-box Gene Family AT2G33340 23.982 1.78e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02448 K12662 - gmx:100788948 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02448 13 18482840 18487297 Bva13g02448 13 18482840 18487297 ECH