Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02438 ATGGCGAACTACGACCTAACTCCACGGATCGCGCCGAACCTGGACAGGCACCTCGTCTTCCCTCTTCTGGAGTTTCTCCAGGAACGCCAACTCTATGAGGACGACCAAATCCTCAAGGCTAAGATCGAACTTCTTAACAAGACCAACATGGTCGACTACGCCATGGATATCCACAAGAGCCTCTACCACACTGAGGATGTTCCTCAAGACATGATCGAAAGGAGAGCGGAGGTTGTGGCCAGGCTTAAGGCTTTGGAGGAGGCTGCAGCGCCGCTTGTTGCCTTCCTGCTTAACGCGGCTGCGGTGCAGGAATTGAGGGCTGACAAGCAGTATAATCTCCAGATGCTCAGGGAAAAATACCAGATTGGCTCTGAACAAATAGAGGCGTTGTATCAATTCGCCAAATTTCAGTTTGAGTGTGGAAACTACTCTGGCGCTGCTGATTATCTTTATCAGTACAGGGCTCTGTGCACAAATAGCGAAAGGAGTCTGAGTGCATTGTGGGGAAAGCTGGCAGCAGAGATTTTGATGCAAAATTGGGATATTGCTGTTGAGGAGCTGAATCGTTTGAAGGAAATTATTGATTCAAAGaACTTCTCATCACCCTTAAATCAGGTGCAAAGCAGAGTATGGTTAATGCACTGGAGTCTATTCATCTATTTCAACCACGACAATGGAAGAACACAGATTATTGATCTGTTTAATCAGGACAAGTATCTAAATGCCATTCAAACCAGTGCTCCACACCTTTTACGGTACTTGGCCACGGCATTCATTGTCAACAAACGCAGGAGGCCTCAATTCAAAGATTTCATAAAAGTTATTCAACAAGAGCAGCATTCATACAAAGATCCCATCACCGAGTTTTTGGCATGTGTTTATGTCAACTATGACTTTGATGAAGcacaaaagaagatgaaggagTGTGAAGAAGTAATTCTCAATGATCCCTTCCTTTGTAAGCGAGTTGAAGAAGGCAACTTTTCTACTGTACCATTGAGGGATGAGTTTCTTGAGAATGCTCGGTTATTTATCTTTGAGACATACTGCAGAATACACCAGCGCATTGACGTGGGagTTCTTgctgagaaattaaatttgaattatgagGAAGCTGAGAGATGGATTGTGAATCTCATCCGTGGCTCAAAACTTGATGGCAAAATTGACTCCAAAACCGGGACTGTCCTCATGGAACCCAATCAACCAAATGTGTATGAGCAACTGATTGACCATACCAAGGCACTTTCAGGCCGTACCTACAAGTTGGTGGGTCAACTCCTGGAACATGCACAACCGCAAGCACAGTCTGCTCGATG 1319 0.4375 MANYDLTPRIAPNLDRHLVFPLLEFLQERQLYEDDQILKAKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMIERRAEVVARLKALEEAAAPLVAFLLNAAAVQELRADKQYNLQMLREKYQIGSEQIEALYQFAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIAVEELNRLKEIIDSKNFSSPLNQVQSRVWLMHWSLFIYFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQHSYKDPITEFLACVYVNYDFDEAQKKMKECEEVILNDPFLCKRVEEGNFSTVPLRDEFLENARLFIFETYCRIHQRIDVGVLAEKLNLNYEEAERWIVNLIRGSKLDGKIDSKTGTVLMEPNQPNVYEQLIDHTKALSGRTYKLVGQLLEHAQPQAQSAR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02438 439 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 429 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bva13g02438 439 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Bva13g02438 439 ProSiteProfiles PCI domain profile. 219 403 IPR000717 -
Bva13g02438 439 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 416 - -
Bva13g02438 439 SMART PINT_4 332 416 IPR000717 -
Bva13g02438 439 Pfam PCI domain 285 399 IPR000717 -
Bva13g02438 439 Gene3D - 229 432 - -
Bva13g02438 439 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 436 - -
Bva13g02438 439 SUPERFAMILY "Winged helix" DNA-binding domain 332 404 IPR036390 -
Bva13g02438 439 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 436 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bva13g02438 439 SMART eIF3_N_2 5 137 IPR019010 -
Bva13g02438 439 PIRSF Transl_init_eIF3e 1 439 IPR016650 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02438 Bva-Chr13 18421342 18424793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02438 3 435 Eukaryotic Initiation Factors Gene Family AT3G57290 86.836 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02438 K03250 - cpap:110807170 822.002