Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02435 ATGGATCACAGAAGGCAACCCAAGGAGTCGCTCTCATACTCCAGTCTCTTCAACCTTGAGCCTTTGATGAATTTTCAACTTCCACAACAAGatgatgattttgattattatgaGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTGGGGCAGTTGCCAATCACAGTAACGGGAATATGCGTGGAAGGGagttaaatatgttaaaaaagagGAGGAGGTCTCTCAACAGTGATGATGAGGACAAGGGCATTTTGTACGGGACACACATGACAGAGGAGAGATATCGATCAATGCTTGGGGAACATATTCAGAAGTATAAGAGGAGGTTCAAGGATACCTCATCTAGTCCTGTTCCAAATCGGGCTGGTATTCCACTTCTCAAAAGTAATGCAGTTTCAAAAGCTCGAAAGTCGGGGAATGAGCACAGGGGAGGATCACATGTTCTGGAAACCACAACTGAATGGCTAAATGATTCTAATCCTCTGAAACCTGGAAACTACCGGGATGCAGATTTCACATTGCAGTATGGAACTGATAGAACTATGTATGAACCTGCTTCTTTGGATATTGGGGATGGCATCACTTACAAAATTCCTCTAACATATGATAAATTGGCAGCAACATTGAATCTTCCGAGTTTCTCAGACATCCAGGTCGAGGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGATGACTGCTGATAAAAGAGTTGGGACTAGAAACCGAGCAGGCATGGGAGAAACCTTATCCCAATATGAATCACTTCAGGCACGATTGAAGGCTATGTCAGCTTCCAATTCAGCTCATAAATTCTGTCTGCAAGTATCCGATATTGATTTGAATTCCTCCATCCCAGAAGGGGCAGCTGGTAGCATAAAGCGAGCTATTTTGTCTGAGGGGGGTGTACTGCAGGTGTATTATGTGAAGGTTTTGGAGAAAGGTGACACATATGAGATCATTGAACGAAGCCTACCTAAGAAGCCAAAGGTAAAGAAAGACCCTTCTATGATTGAGAAGgaagaaatggaaagaatTGGGAAAGTTTGGGTAAACATTGTAAGAAGGGATATACCGAAGCACCATAGGATGTTTACAGCTTTCCACCGAAAGCAACTCACTGATGCCAAGAGGTTCTCAGAGAACTGTCAGAGAGAGGTTAGAATGAAAGTGAGTAGATCTCTTAAATTGATGAGGGGGGCTGCCATTCGCACCCGGAAACTGGCTAGAGACATGTTGCTGTTCTGGAAACGAGTTGATAAAGAGATGGCAGAAATCAGgaagaaagaggagaaagaagcTGCTGAAGCTTTGAGGCGTGAACAAGAGCTTCGAGAAGCAAAGAGACAGCAGCAAAggcttaattttcttatacaaCAAACTGAGCTGTATAGTCACTTTATGCAGAACAAGTCAAACTTACTGTCTTCAGAAGCATTACCAATAGAAGATGAAAAAGCAAATGAGCAGGAGATGCTACTTGACTCCTCAGATGTTGGGCATAGTGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGTTGCTCAAGAAGCAGTCTCAAAGCAGAGAAGGTTGACAGATGCTTTTGATAGTGAATGCTTGAAGCTCCGCCATGCTGCTGAAACTGATACACTTCAAGAGGAAGTTGCAGGATCTAGTAACATTGATTTGCAAACCCCCTCAACCATGCCAGTGGCTTCAACGGTTCAGACACCAGAATTGTTCAAAGGATGTCTAAAGGAATATCAGTTGAAAGGTCTTCAGTGGCTAGTTAACTGTTACGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACTATCCAGGCTATGGCCTTTTTAGCACATTTGGCTGAGgagaaaaatatatggGGACCTTTTCTGGTTGTTGCACCTGCATCTGTGTTAAATAATTGGGTTGATGAACTGAAACGCTTCTGCCCTGAACTGATAAGTTTGCCTTACTGGGGTGTGGAGCGGACAGTACTTAGAAAAAGTATTAACCCTAAGGAGCTTTATCGCAGGGAAGCTAAGTTTCACATTCTGATCACAAGCTACCAGCTACTAGTATCAGATGAAAAGTATTTTCGGCGTGTAAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCAATCAAAAGTTCAAACAGTATAAGATGGAAGACGCTTCTCAGCTTCAATTGTCGGAACCGGCTACTTCTTACTGGTACACCTATTCAGAATAATATGGCAGAGCTGTGGgctcttcttcattttattatgcCAACTTTATTTGATAGCCACGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATCGAAAACCATGCAGAGCATGGGGGTACTTTGAATGAACATCAACTTAACAGATTGCATTCAATTCTGAAGCCTTTTATGCTGCGGCGAGTTAAGAAAGATGTAGTTTCTGAGCTGACAACGAAAACTGAGGTTACTGTGCATTGCAAGTTGAGTTCTCGTCAGCAAGCATTCTATCAAGCAATTAAAAACAAGATATCCCTTGCTGAGTTGTTTGATGGTAGTCGTGGACAtatcaatgaaaagaaaattctgaatttaATGAACATTGTTATTCAGTTGCGGAAGGTATGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGGACATACTTCTACTTTGGAGAGATTCCAAATTCCTTACCACCTCCTCCATTTGGGGAGTTGGAAGATGTTTACTATTCTGGAGGTCACAATCCCATATCTTATGAGATACCAAAATTACTCtatcaagaaattttgcaGAGTTCTGAAACACTTAGTTCGGCTACTTGTCGTGGTGTCTACAGAGAATCTTTTCAgaaacattttaatatttttagaccagaaaatatttatagatccATATTCTTGCAAGAGGACAAATCAGAGGAATCAAATGGGCAGATTGTTAGAAGTGGAACTTTTGGTTTTACCCATTTAATGGGTTTGTCTCCACAGGAGGTGACGTTTCTGGCTACTGGTTCTTTTATGGAGCTAATACTATTTTCTATGATGAGATGGGAACAGAAATTTGTCAATGGATTTCTAGACATTATGGAGACTATGGATGACGATCCTGAATGTAGTGACCTTGATAAAGGAAAAGTGAGGGCTGTTACCAAAATGTTATTGGTGCCATCAAGGTCTGAGACTATGTTTCTTCAAAGAAGATTTGCAACCGGGCCCATCCATGCTCCTTTTGAGGCCTTGGTTGTTCCACATGAGGACAGGCTTCTTTCTAATACAAGGCTTCTTCACTCAGCTTACACTTACATCCCTCCAACTAGAGCTCCCCCaATTGGTGCCCACTGCTCAGACAAAAACTTCTcatataaaatgattgaagAATTACATGACCCTTGGATTATGAGGTTGCTTGTGGGAACTGCACGTACATCTGAGTATAATGGTCCTAGAAAGCCTGATGGCCCTCACCATTTAATTCAAGAGATTGACTCCGAACTACCAGTTTCACGGCCTGCTCTTCGGTTAACATACAACATATTTGGGTCTTCACCACCCATGCGAAATTTTGACCCTGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACACttgatatattattgaaaCGCTTGAGGGCAGAAAATCACCGCGTTCTCTTGTTTGCTCAGATGACTAAGATGCTTAATATTCTCGAGGACTATATGAACTACAGAAAGTATAGATATTTTAGACTTGATGGATCTTCTTCTATTCAGGACCGCCGAGACATGGTCAGAGACTTCCAGCATAGGAGTGACATTTTCGTGTTCTTACTGAGTACAAGAGCTGGTGGTTTGGGTATTAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACGCTGGATTCACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACGAGAGATGTTACTGTCTACCGACTTATATGTAAAGAGACTGTTGAAGAGAAAATCCTTCTCAGAGCAAGCCAAAAAAGTACTGTACAAAACCTTGTCATGACAGGTGGTTCTGTCGGTGGTGATATTTTGGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGCACAGTTGGAGCAGAAGCTGAAGGAAATCCCTCTCCAGGGAAAAGACAAGCAAAAGAGGAAACAACCTATGAAGGCTATACGTATAAATGAAGAAGGAGATGCATCTTTGGAAGATATAACAAACACTGGACCCCAGGGTACTGATAATGAGCTTTCTCAGGAACCAGAGGGGTCAAAGTCCAGTAGTAAGAAGAGAAAAGCAGCTTCCGACAAGCAAACTCCATCATCAAGAGTAAGGAAGGTGAATGAAGTCAGTATCGACCATGAATTGGATGATTCCCTTCTAAATACTGATTCGGTGGGTCAGAAACCTAAAAGACTCAAGAGACAAAAGAAGAGTGTAAATGAAAAGTTTGAAGAGTCTTTTGATGCTACGAGTACGATAGTCCCTGAGTTGACCGAATTTCCACCTCCCCATACTAAAGAAGACTG 4571 0.4049 MDHRRQPKESLSYSSLFNLEPLMNFQLPQQDDDFDYYENSSQDESRDSQGGAVANHSNGNMRGRELNMLKKRRRSLNSDDEDKGILYGTHMTEERYRSMLGEHIQKYKRRFKDTSSSPVPNRAGIPLLKSNAVSKARKSGNEHRGGSHVLETTTEWLNDSNPLKPGNYRDADFTLQYGTDRTMYEPASLDIGDGITYKIPLTYDKLAATLNLPSFSDIQVEEFYLKGTLDLGSLAAMMTADKRVGTRNRAGMGETLSQYESLQARLKAMSASNSAHKFCLQVSDIDLNSSIPEGAAGSIKRAILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKPKVKKDPSMIEKEEMERIGKVWVNIVRRDIPKHHRMFTAFHRKQLTDAKRFSENCQREVRMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEIRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSEALPIEDEKANEQEMLLDSSDVGHSEEEDPEEAELKKEALKVAQEAVSKQRRLTDAFDSECLKLRHAAETDTLQEEVAGSSNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWVDELKRFCPELISLPYWGVERTVLRKSINPKELYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDGSRGHINEKKILNLMNIVIQLRKVCNHPELFERSEGRTYFYFGEIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLLYQEILQSSETLSSATCRGVYRESFQKHFNIFRPENIYRSIFLQEDKSEESNGQIVRSGTFGFTHLMGLSPQEVTFLATGSFMELILFSMMRWEQKFVNGFLDIMETMDDDPECSDLDKGKVRAVTKMLLVPSRSETMFLQRRFATGPIHAPFEALVVPHEDRLLSNTRLLHSAYTYIPPTRAPPIGAHCSDKNFSYKMIEELHDPWIMRLLVGTARTSEYNGPRKPDGPHHLIQEIDSELPVSRPALRLTYNIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSSIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDSQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDILAPEDVVSLLLDDAQLEQKLKEIPLQGKDKQKRKQPMKAIRINEEGDASLEDITNTGPQGTDNELSQEPEGSKSSSKKRKAASDKQTPSSRVRKVNEVSIDHELDDSLLNTDSVGQKPKRLKRQKKSVNEKFEESFDATSTIVPELTEFPPPHTKED 1523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02435 1523 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1213 1363 IPR001650 -
Bva13g02435 1523 CDD SF2_C_SNF 1201 1333 - -
Bva13g02435 1523 MobiDBLite consensus disorder prediction 1437 1474 - -
Bva13g02435 1523 Pfam DNA-binding domain 350 479 IPR020838 GO:0003677
Bva13g02435 1523 MobiDBLite consensus disorder prediction 1415 1436 - -
Bva13g02435 1523 MobiDBLite consensus disorder prediction 32 65 - -
Bva13g02435 1523 SMART helicmild6 1239 1322 IPR001650 -
Bva13g02435 1523 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Bva13g02435 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 818 1401 IPR027417 -
Bva13g02435 1523 Gene3D - 585 825 IPR038718 -
Bva13g02435 1523 MobiDBLite consensus disorder prediction 1393 1523 - -
Bva13g02435 1523 Pfam SNF2-related domain 605 890 IPR000330 GO:0005524|GO:0140658
Bva13g02435 1523 MobiDBLite consensus disorder prediction 1393 1414 - -
Bva13g02435 1523 MobiDBLite consensus disorder prediction 43 62 - -
Bva13g02435 1523 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 771 IPR014001 -
Bva13g02435 1523 SMART ultradead3 586 779 IPR014001 -
Bva13g02435 1523 Coils Coil 427 466 - -
Bva13g02435 1523 Gene3D - 826 896 IPR027417 -
Bva13g02435 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 816 IPR027417 -
Bva13g02435 1523 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 1497 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Bva13g02435 1523 PANTHER HELICASE SRCAP-RELATED 17 1497 - -
Bva13g02435 1523 Pfam Helicase conserved C-terminal domain 1213 1322 IPR001650 -
Bva13g02435 1523 Gene3D - 1181 1468 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02435 Bva-Chr13 18401266 18412910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02435 611 898 RAD5 or RAD16-like Gene Family AT5G43530 28.402 5.73e-27 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva13g02435 SNF2_N 8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02435 K11665 - gmx:100780615 2434.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02435 13 18401266 18412910 Bva13g02435 13 18401266 18412910 ECH